src/hg/blastToPsl/tests/makefile 1.18
1.18 2009/04/12 05:48:42 markd
fixed bug parsing PSI BLAST output with no hits
Index: src/hg/blastToPsl/tests/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/blastToPsl/tests/makefile,v
retrieving revision 1.17
retrieving revision 1.18
diff -b -B -U 4 -r1.17 -r1.18
--- src/hg/blastToPsl/tests/makefile 12 Apr 2009 03:47:20 -0000 1.17
+++ src/hg/blastToPsl/tests/makefile 12 Apr 2009 05:48:42 -0000 1.18
@@ -7,9 +7,9 @@
test: protMrnaTest protDnaTest mrnaDnaTest mrnaDnaxTest \
blockBugTest identityBugTest protMrnaEval1Test protMrnaEval2Test \
longDbNameTest multiLineDescTest tblastxTest tblastnTest \
- blastpPsiTest
+ blastpPsiTest psiNoHitsTest
#tblastnDbFirstTest megaBlastTest
protMrnaTest: mkdirs
@@ -107,8 +107,15 @@
pslCheck -verbose=0 output/$@.psl
diff -u expected/$@.psl output/$@.psl
diff -u expected/$@.bscores output/$@.bscores
+# PSI-BLASTP with no hits
+psiNoHitsTest: mkdirs
+ ${blastToPsl} -scores=output/$@.bscores input/psiNoHits.blast output/$@.psl
+ pslCheck -verbose=0 output/$@.psl
+ diff -u expected/$@.psl output/$@.psl
+ diff -u expected/$@.bscores output/$@.bscores
+
clean::
rm -rf output
mkdirs: