src/utils/qa/checkMetaData.csh 1.17

Index: src/utils/qa/checkMetaData.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/checkMetaData.csh,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 4 -r1.16 -r1.17
--- src/utils/qa/checkMetaData.csh	11 Apr 2009 00:37:01 -0000	1.16
+++ src/utils/qa/checkMetaData.csh	13 Apr 2009 16:13:28 -0000	1.17
@@ -202,15 +202,16 @@
 
 # get lookup for clade check
 # filter out "/" when it appears in genome name - to avoid e.g, Dog/Human
 hgsql $host1 -Ne 'SELECT * FROM genomeClade WHERE genome LIKE "%'$genome'"' \
-  $centdb1 | grep -v "/" > $metatable.$db.$out1 
+  $centdb1 | grep -v "/" | sort > $metatable.$db.$out1 
 hgsql $host2 -Ne 'SELECT * FROM genomeClade WHERE genome LIKE  "%'$genome'"' \
-  $centdb2 | grep -v "/" > $metatable.$db.$out2
+  $centdb2 | grep -v "/" | sort > $metatable.$db.$out2
  
 set metatable=""
 
 # compare and  print results
+# should replace with commTiro.csh, but for now simply sorting genomeClade above
 foreach table ( `echo $metatables` )
   comm -23 $table.$db.$out1 $table.$db.$out2 > $table.$db.${out1}Only
   comm -13 $table.$db.$out1 $table.$db.$out2 > $table.$db.${out2}Only
   comm -12 $table.$db.$out1 $table.$db.$out2 > $table.$db.common