src/hg/blastToPsl/tests/makefile 1.17

Index: src/hg/blastToPsl/tests/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/blastToPsl/tests/makefile,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 1000000 -r1.16 -r1.17
--- src/hg/blastToPsl/tests/makefile	22 Aug 2007 02:49:47 -0000	1.16
+++ src/hg/blastToPsl/tests/makefile	12 Apr 2009 03:47:20 -0000	1.17
@@ -1,107 +1,115 @@
 include ../../../inc/common.mk
 
 #blastToPsl = valgrind --tool=memcheck ../blastToPsl
 blastToPsl = ../blastToPsl
 
 all:
 
 test:	protMrnaTest protDnaTest mrnaDnaTest mrnaDnaxTest \
 	blockBugTest identityBugTest protMrnaEval1Test protMrnaEval2Test \
-	longDbNameTest multiLineDescTest tblastxTest tblastnTest
+	longDbNameTest multiLineDescTest tblastxTest tblastnTest \
+	blastpPsiTest
 
 #tblastnDbFirstTest megaBlastTest
 
 protMrnaTest: mkdirs
 	${blastToPsl} -scores=output/$@.bscores input/kgProtMRna1.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 	diff -u expected/$@.bscores output/$@.bscores
 
 protDnaTest: mkdirs
 	${blastToPsl} -scores=output/$@.bscores input/kgProtDna1.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 	diff -u expected/$@.bscores output/$@.bscores
 
 mrnaDnaTest: mkdirs
 	${blastToPsl} input/mrnaDna1.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
 mrnaDnaxTest: mkdirs
 	${blastToPsl} -pslx input/mrnaDna1.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
 # test case that cause huge target block start.
 blockBugTest: mkdirs
 	${blastToPsl} input/blockBug.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
 # handle id
 identityBugTest: mkdirs
 	${blastToPsl} input/identityBug.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
 # test E-value threshold filter
 protMrnaEval1Test: mkdirs
 	${blastToPsl} -eVal=1 -scores=output/$@.bscores input/kgProtMRna1.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 	diff -u expected/$@.bscores output/$@.bscores
 
 protMrnaEval2Test: mkdirs
 	${blastToPsl} -eVal=1e-10 -scores=output/$@.bscores input/kgProtMRna1.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 	diff -u expected/$@.bscores output/$@.bscores
 
 longDbNameTest: mkdirs
 	${blastToPsl} input/longDbName.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
 # multiline description broke parser
 multiLineDescTest: mkdirs
 	${blastToPsl} input/multiLineDesc.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
 # tblastx
 tblastxTest: mkdirs
 	${blastToPsl} -scores=output/$@.bscores input/tblastx.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 	diff -u expected/$@.bscores output/$@.bscores
 
 # tblastn
 tblastnTest: mkdirs
 	${blastToPsl} -scores=output/$@.bscores input/tblastn.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 	diff -u expected/$@.bscores output/$@.bscores
 
 
 # this test is currently disabled.  This file has Database: before Query= and
 # there are multiple queries for each Database:
 tblastnDbFirstTest: mkdirs
 	${blastToPsl} input/tblastnDbFirst.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
 
 # this test is currently disabled, mega-blast is painful because
 # Database: comes before Query= and there are multiple queries for each
 # Database:.
 megaBlastTest: mkdirs
 	${blastToPsl} input/970.blast output/$@.psl
 	pslCheck -verbose=0 output/$@.psl
 	diff -u expected/$@.psl output/$@.psl
 
+# PSI-BLASTP 
+blastpPsiTest: mkdirs
+	${blastToPsl} -scores=output/$@.bscores input/blastpPsi.blast output/$@.psl
+	pslCheck -verbose=0 output/$@.psl
+	diff -u expected/$@.psl output/$@.psl
+	diff -u expected/$@.bscores output/$@.bscores
+
 clean::
 	rm -rf output
 
 mkdirs:
 	@${MKDIR} output