src/hg/hgTables/microarrayTables.c 1.3
1.3 2009/04/10 23:52:18 aamp
Added error Ann suggested when intersection is turned on.
Index: src/hg/hgTables/microarrayTables.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTables/microarrayTables.c,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 1000000 -r1.2 -r1.3
--- src/hg/hgTables/microarrayTables.c 10 Apr 2009 20:04:29 -0000 1.2
+++ src/hg/hgTables/microarrayTables.c 10 Apr 2009 23:52:18 -0000 1.3
@@ -1,37 +1,41 @@
/* Stuff to handle microarray tables */
#include "common.h"
#include "hash.h"
#include "linefile.h"
#include "trackDb.h"
#include "customTrack.h"
#include "microarray.h"
#include "hgTables.h"
boolean isMicroarray(struct trackDb *parent, char *table)
/* Return TRUE if table is specified as a microarray in the current database's
* trackDb. */
{
struct trackDb *tdb = findTdbForTable(database, parent, table);
return (tdb && (startsWith("expRatio", tdb->type) || startsWith("array", tdb->type)));
}
void doOutMicroarrayNames(struct trackDb *tdb)
/* Show the microarray names from .ra file */
{
-struct microarrayGroups *allGroups = maGetTrackGroupings(database, tdb);
+struct microarrayGroups *allGroups;
+if (anyIntersection())
+ errAbort("Can't do all fields output when intersection is on. "
+ "Please go back and select another output type (BED or custom track is good), or clear the intersection.");
+allGroups = maGetTrackGroupings(database, tdb);
if (allGroups)
{
struct maGrouping *allArrays = allGroups->allArrays;
int i;
if (allArrays)
{
textOpen();
printf("#expId\tname\n");
for (i = 0; i < allArrays->size; i++)
{
printf("%d\t%s\n", allArrays->expIds[i], allArrays->names[i]);
}
}
}
}