src/utils/qa/compareHgFindSpecAll.csh 1.5

Index: src/utils/qa/compareHgFindSpecAll.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/compareHgFindSpecAll.csh,v
retrieving revision 1.4
retrieving revision 1.5
diff -b -B -U 1000000 -r1.4 -r1.5
--- src/utils/qa/compareHgFindSpecAll.csh	16 Jun 2006 23:09:32 -0000	1.4
+++ src/utils/qa/compareHgFindSpecAll.csh	11 Apr 2009 00:37:02 -0000	1.5
@@ -1,83 +1,84 @@
 #!/bin/tcsh
+source `which qaConfig.csh`
 
 ###############################################
 #  Checks all fields in hgFindSpec
 ###############################################
 
 if ($#argv < 1 || $#argv > 4) then
   echo ""
   echo "  checks all fields in hgFindSpec"
   echo
   echo "    usage: database, [machine1], [machine2] (defaults to hgw1 and hgwbeta)"
   echo "             [mode] (fast) "
   echo ""
   exit 1
 endif
 
 #set machine1 = "hgwdev"
 set machine1 = "hgw1"
 set machine2 = "hgwbeta"
 set inputMode=""
 set mode2="realTime"
 
 set db = $argv[1]
 if ( $#argv > 2 ) then
   set machine1 = $argv[2]
   set machine2 = $argv[3]
 endif
 
 if ( $#argv == 2 ) then
   set inputMode = $argv[2]
 endif
 
 if ( $#argv == 4 ) then
   set inputMode = $argv[4]
 endif
 
 if (! ( $inputMode == "fast" || $inputMode == "realTime" || $inputMode == "" )) then
     echo
     echo "  mode ($inputMode) not acceptable.\n"
     echo "${0}:"
     $0
     exit 1
   endif
 endif
 
 if ( $inputMode == "fast" ) then
   set mode2 = "fast" 
 endif
 
 foreach mach ( $machine1 $machine2 )
   checkMachineName.csh $mach
   if ( $status ) then
     echo "${0}:"
     $0
     exit 1
   endif
 end
 
 set table = "hgFindSpec"
 set fields=`hgsql -N -e "DESC $table" $db | gawk '{print $1}' | grep -vw "html"`
 if ( $status ) then
   echo  
   echo "  query failed.  check database name."
   echo  
   exit 1
 endif
 
 
 foreach field ( $fields )
   if ( $mode2 == "fast" || $field == "searchSettings" ) then
     compareHgFindSpecFast.csh $machine1 $machine2 $db $field
     if ( $status ) then
       exit 1
     endif
   else
     compareHgFindSpecs.csh $machine1 $machine2 $db $field
     if ( $status ) then
       exit 1
     endif
   endif
 end
 
 exit 0