src/utils/qa/findOrg.csh 1.6
1.6 2009/04/11 00:37:03 rhead
Sourced new qaConfig file at the top. Changed -h hgwbeta lines to look for sql host stored in a variable, specified in the new qaConfig file.
Index: src/utils/qa/findOrg.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/findOrg.csh,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 1000000 -r1.5 -r1.6
--- src/utils/qa/findOrg.csh 29 Jan 2009 19:13:47 -0000 1.5
+++ src/utils/qa/findOrg.csh 11 Apr 2009 00:37:03 -0000 1.6
@@ -1,44 +1,45 @@
#!/bin/tcsh
+source `which qaConfig.csh`
################################
#
# 03-31-2008
# Ann Zweig
#
# Find the organism name given the assembly name
#
################################
set date=""
if ( $#argv < 1 | $#argv > 2 ) then
echo
echo " Finds the organism name given the assembly name"
echo " usage: assemblyName [date]"
echo " will accept name with or without digit"
echo " use 'date' to also retrieve assembly date"
echo " (e.g. 'ornAna2' or 'ornAna')"
echo
exit 1
else
set db=$argv[1]
endif
if ( $#argv == 2 ) then
set date=$argv[2]
if ( $date != "date" ) then
echo "\n error. use the word 'date' as second parameter\n"
exit 1
endif
set date=", description"
endif
if ( "$HOST" != "hgwdev" ) then
echo "\n ERROR: you must run this script on dev!\n"
exit 1
endif
hgsql -t -e "SELECT name, organism $date FROM dbDb WHERE NAME LIKE '$db%' \
ORDER BY name" hgcentraltest | tail -n+3
exit 0