src/utils/qa/genbankRun.csh 1.2

Index: src/utils/qa/genbankRun.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/genbankRun.csh,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 1000000 -r1.1 -r1.2
--- src/utils/qa/genbankRun.csh	9 Nov 2005 20:17:39 -0000	1.1
+++ src/utils/qa/genbankRun.csh	11 Apr 2009 00:37:03 -0000	1.2
@@ -1,57 +1,58 @@
 #!/bin/tcsh
+source `which qaConfig.csh`
 
 ################################
 #  
 #  11-08-2005
 #  Ann Zweig
 #
 #  checks to see if genbank is running on the RR for a particular assembly
 #
 ################################
 
 set db=""
 set count=0
 set newCount=0
 set machine="hgw1"
 set tableName="gbCdnaInfo"
 
 if ( $#argv != 1 ) then
   # no arguments
   echo
   echo " checks to see if genbank is running on the RR for a given assembly." 
   echo " (should take less than one minute to run.)"
   echo
   echo "    usage: genbankRun.csh database_name"
   echo
   exit
 else
   set db=$argv[1]
 endif
 
 
 # check to see if the database exists
 set count = `getRRdatabases.csh $machine | grep -c -i $db`
 
 if ($count != 1) then
   echo "ERROR: the $db database does not exist on $machine.  Exiting."
   exit
 endif
 echo
 
 # check to see if the existing database has a $tableName table
 set newCount = `getAssemblies.csh $tableName $machine | grep -c -i $db`
 
 # if the $tableName is present in this $db on this $machine,
 # there will be 2 instances of $db in the output
 if ($newCount != 2) then
   echo "ERROR: the $db database does not have a $tableName table on $machine.  Exiting."
   exit
 endif
 
 
 # database is present, go ahead with the updateTimes script
 echo "This shows the last time the genbank $tableName table was updated"
 echo "for $db on hgwbeta (listed first) and on hgw1 (listed second):"
 
 updateTimes.csh $db $tableName hgwbeta $machine | grep '[0-9,4]'