src/hg/hgTables/intersect.c 1.49
1.49 2009/04/10 20:04:29 tdreszer
Fix many instances of using composite tdb when subtrack tdb is needed
Index: src/hg/hgTables/intersect.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTables/intersect.c,v
retrieving revision 1.48
retrieving revision 1.49
diff -b -B -U 4 -r1.48 -r1.49
--- src/hg/hgTables/intersect.c 17 Mar 2009 04:28:39 -0000 1.48
+++ src/hg/hgTables/intersect.c 10 Apr 2009 20:04:29 -0000 1.49
@@ -580,27 +580,8 @@
bitFree(&bits2);
return intersectedBedList;
}
-static char *getPrimaryType(char *primarySubtrack, struct trackDb *tdb)
-/* Do not free when done. */
-/* Copied in from hui.c... really isSubtrackMerged should take two tdbs
- * and incorporate the name and type checking! */
-{
-struct trackDb *subtrack = NULL;
-char *type = NULL;
-if (primarySubtrack)
- for (subtrack = tdb->subtracks; subtrack != NULL; subtrack = subtrack->next)
- {
- if (sameString(subtrack->tableName, primarySubtrack))
- {
- type = subtrack->type;
- break;
- }
- }
-return type;
-}
-
struct bed *getRegionAsMergedBed(
char *db, char *table, /* Database and table. */
struct region *region, /* Region to get data for. */
char *filter, /* Filter to add to SQL where clause if any. */
@@ -619,9 +600,9 @@
Bits *bits1 = NULL;
Bits *bits2 = NULL;
struct bed *bedMerged = NULL;
struct trackDb *subtrack = NULL;
- char *primaryType = getPrimaryType(table, curTrack);
+ char *primaryType = findTypeForTable(database,curTrack,table);
char *op = cartString(cart, hgtaSubtrackMergeOp);
boolean isBpWise = (sameString(op, "and") || sameString(op, "or"));
double moreThresh = cartDouble(cart, hgtaSubtrackMergeMoreThreshold);
double lessThresh = cartDouble(cart, hgtaSubtrackMergeLessThreshold);