src/hg/makeDb/doc/droEre2.txt 1.2

1.2 2009/04/07 16:55:45 angie
Swapped chains/nets from dm3 to get liftOver chains to dm3 -- user request.

Index: src/hg/makeDb/doc/droEre2.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/droEre2.txt,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 4 -r1.1 -r1.2
--- src/hg/makeDb/doc/droEre2.txt	22 Sep 2006 00:45:03 -0000	1.1
+++ src/hg/makeDb/doc/droEre2.txt	7 Apr 2009 16:55:45 -0000	1.2
@@ -105,4 +105,16 @@
     # Because this is a no-browser build (just masking for alignment)
     # I did not make the usual /gbdb/$db/$db.2bit link.
 
 
+#########################################################################
+# SWAP DM3 CHAIN/NET (DONE 4/3/09 angie)
+    mkdir /hive/data/genomes/droEre2/bed/blastz.dm3.swap
+    cd /hive/data/genomes/droEre2/bed/blastz.dm3.swap
+    doBlastzChainNet.pl -swap -bigClusterHub swarm -smallClusterHub memk \
+      -workhorse kolossus \
+      /hive/data/genomes/dm3/bed/blastz.droEre2/DEF >& do.log &
+    tail -f do.log
+    ln -s blastz.dm3.swap /hive/data/genomes/droEre2/bed/blastz.dm3
+
+
+#########################################################################