src/hg/makeDb/doc/droGri2.txt 1.3

1.3 2009/04/07 16:55:46 angie
Swapped chains/nets from dm3 to get liftOver chains to dm3 -- user request.

Index: src/hg/makeDb/doc/droGri2.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/droGri2.txt,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 4 -r1.2 -r1.3
--- src/hg/makeDb/doc/droGri2.txt	23 Oct 2006 22:45:39 -0000	1.2
+++ src/hg/makeDb/doc/droGri2.txt	7 Apr 2009 16:55:46 -0000	1.3
@@ -153,4 +153,16 @@
       ../../droGri2.WMSDust.2bit
     rm tmp.fa
 
 
+#########################################################################
+# SWAP DM3 CHAIN/NET (DONE 4/3/09 angie)
+    mkdir /hive/data/genomes/droGri2/bed/blastz.dm3.swap
+    cd /hive/data/genomes/droGri2/bed/blastz.dm3.swap
+    doBlastzChainNet.pl -swap -bigClusterHub swarm -smallClusterHub memk \
+      -workhorse kolossus \
+      /hive/data/genomes/dm3/bed/blastz.droGri2/DEF >& do.log &
+    tail -f do.log
+    ln -s blastz.dm3.swap /hive/data/genomes/droGri2/bed/blastz.dm3
+
+
+#########################################################################