src/hg/makeDb/doc/droMoj3.txt 1.4

1.4 2009/04/07 16:55:47 angie
Swapped chains/nets from dm3 to get liftOver chains to dm3 -- user request.

Index: src/hg/makeDb/doc/droMoj3.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/droMoj3.txt,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 4 -r1.3 -r1.4
--- src/hg/makeDb/doc/droMoj3.txt	19 Sep 2008 06:24:58 -0000	1.3
+++ src/hg/makeDb/doc/droMoj3.txt	7 Apr 2009 16:55:47 -0000	1.4
@@ -196,4 +196,15 @@
     tail -f do.log
 
 
 #########################################################################
+# SWAP DM3 CHAIN/NET (DONE 4/6/09 angie)
+    mkdir /hive/data/genomes/droMoj3/bed/blastz.dm3.swap
+    cd /hive/data/genomes/droMoj3/bed/blastz.dm3.swap
+    doBlastzChainNet.pl -swap -bigClusterHub swarm -smallClusterHub memk \
+      -workhorse kolossus \
+      /hive/data/genomes/dm3/bed/blastz.droMoj3/DEF.hive >& do.log &
+    tail -f do.log
+    ln -s blastz.dm3.swap /hive/data/genomes/droMoj3/bed/blastz.dm3
+
+
+#########################################################################