src/hg/instinct/bioInt2/makefile 1.7
1.7 2009/04/04 00:39:22 jsanborn
added cohorts api
Index: src/hg/instinct/bioInt2/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/bioInt2/makefile,v
retrieving revision 1.6
retrieving revision 1.7
diff -b -B -U 1000000 -r1.6 -r1.7
--- src/hg/instinct/bioInt2/makefile 29 Mar 2009 01:40:43 -0000 1.6
+++ src/hg/instinct/bioInt2/makefile 4 Apr 2009 00:39:22 -0000 1.7
@@ -1,71 +1,79 @@
include ../../../inc/common.mk
L += $(MYSQLLIBS) -lm
MYLIBDIR = ../../../lib/${MACHTYPE}
MYLIBS = $(MYLIBDIR)/jkhmap.a $(MYLIBDIR)/jkhgap.a ${MYLIBDIR}/jkweb.a
Gplusplus=g++
A1 = bioIntegrator
O1 = bioIntegrator.o bioIntDriver.o bioIntDb.o
H1 = bioIntDriver.h bioIntDb.h
A2 = populateDb
O2 = populateDb.o bioIntDb.o
H2 = bioIntDb.h
A3 = bioController
O3 = bioController.o bioLevelI.o bioGeneLevel.o bioSetLevel.o bioIntDriver.o bioIntDb.o
H3 = bioIntDriver.h bioIntDb.h
A4 = setCohorts
O4 = setCohorts.o bioIntDb.o
H4 = bioIntDb.h
A5 = cohortCorrelations
O5 = cohortCorrelations.o bioIntDb.o
H5 = bioIntDb.h
+A6 = grabData
+O6 = grabData.o bioIntDb.o
+
A = bioIntUI
O = bioIntUI.o bioIntDb.o
H = bioIntUI.h bioIntDb.h
include ../../../inc/cgi_build_rules.mk
HGFRONTEND = /usr/local/apache/htdocs/bioInt
all: ${A1} ${A2} ${A3} ${A4} ${A} ${A5}
my::
rsync -a --exclude=CVS/ --delete bioIntFrontend/* ${HGFRONTEND}-${USER}/
compile: $O $H
${CC} ${COPT} $O ${MYLIBS} ${L}
mv ${AOUT} $A${EXE}
bioIntUI: $O $H
${CC} ${COPT} $O ${MYLIBS} ${L}
mv ${AOUT} $A${EXE}
bioIntegrator: ${O1} ${H1}
${CC} ${COPT} ${O1} ${MYLIBS} ${L}
mv ${AOUT} ${A1}${EXE}
populateDb: ${O2} ${H2} ${MYLIBS}
${CC} ${COPT} ${O2} ${MYLIBS} ${L}
mv ${AOUT} ${A2}${EXE}
bioController: ${O3} ${H3}
${CC} ${COPT} ${O3} ${MYLIBS} ${L}
mv ${AOUT} ${A3}${EXE}
setCohorts: ${O4} ${H4}
${CC} ${COPT} ${O4} ${MYLIBS} ${L}
mv ${AOUT} ${A4}${EXE}
cohortCorrelations: ${O5} ${H5}
${CC} ${COPT} ${O5} ${MYLIBS} ${L}
mv ${AOUT} ${A5}${EXE}
+
+grabData: ${O6}
+ ${CC} ${COPT} ${O6} ${MYLIBS} ${L}
+ mv ${AOUT} ${A6}${EXE}
+
clean::
rm -f ${O1} ${O2} ${O3} ${O4} ${O}