galt: changes by file

branch to review (2009-03-31 to 2009-04-07) v203

• src/hg/hgGenome/hgGenome.c
  • 1.64 lines changed: 22, context: html, text, full: html, text
    add function checkAndClear so that do commands are not stuck in cart after an errAbort
• src/hg/hgGenome/import.c
  • 1.14 lines changed: 20, context: html, text, full: html, text
    use genoLayDbChromsExt for chromList
• src/hg/hgGenome/mainPage.c
  • 1.26 lines changed: 64, context: html, text, full: html, text
    deal with javascript and cases where only cga (clade,genome,assembly) will appear since there are no usable chroms
• src/hg/inc/genoLay.h
  • 1.5 lines changed: 4, context: html, text, full: html, text
    add genoLayDbChromsExt to handle case of not abort on error
• src/hg/lib/botDelay.c
  • 1.14 lines changed: 2, context: html, text, full: html, text
    use standard function in hui to get central.cookie - note RR does not set central.cookie, so it has to provide the default "hguid"
• src/hg/lib/genoLay.c
  • 1.12 lines changed: 10, context: html, text, full: html, text
    removing some unneeded bits
  • 1.11 lines changed: 48, context: html, text, full: html, text
    add genoLayDbChromsExt to handle case of not abort on error, also change filtering to only include chr chroms other than chrUn and chrM
• src/inc/common.mk
  • 1.60 lines changed: 2, context: html, text, full: html, text
    reversing ourselves to have USE_SSL=0 be the default since some mirror sites have difficulty
• src/lib/cheapcgi.c
  • 1.114 lines changed: 44, context: html, text, full: html, text
    making post action URI query params available to cgi hash, and they take precedence over form vars