larrym: changes by commit

branch to review (2009-03-31 to 2009-04-07) v203

• cleanup and fix typos
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html 1.5 - lines changed: 30, context: html, text, full: html, text
• use pushq B (i.e. to force human review before QA sees the entry)
  • src/hg/encode/encodeLoad/doEncodeLoad.pl 1.60 - lines changed: 1, context: html, text, full: html, text
• cleanup
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaMethyl27.html 1.6 - lines changed: 94, context: html, text, full: html, text
• fix Methyl27K56 long labels
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.235 - lines changed: 2, context: html, text, full: html, text
• allow user to use remote db (e.g. mysql.cse.ucsc.edu)
  • src/hg/utils/bedExtendRanges/bedExtendRanges.c 1.3 - lines changed: 25, context: html, text, full: html, text
• fix typo in usage
  • src/hg/utils/bedExtendRanges/bedExtendRanges.c 1.4 - lines changed: 1, context: html, text, full: html, text
• support host, user and password args
  • src/hg/bedItemOverlapCount/bedItemOverlapCount.c 1.10 - lines changed: 23, context: html, text, full: html, text
• add bedItemOverlapCount and bedExtendRanges to userApps list
  • src/makefile 1.60 - lines changed: 6, context: html, text, full: html, text
• add dcc to downloadDir
  • src/hg/utils/automation/Encode.pm 1.37 - lines changed: 1, context: html, text, full: html, text
• table name changed
  • src/hg/encode/encodeValidate/test/expected/methylseq/README.txt 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/test/expected/methylseq/load.ra 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/test/expected/methylseq/trackDb.ra 1.3 - lines changed: 20, context: html, text, full: html, text