hiram: changes by file

review to branch (2009-04-21 to 2009-04-28) v205

• src/hg/hgc/hgc.c
  • 1.1529 lines changed: 25, context: html, text, full: html, text
    GeneLynx.com is no longer available
• src/hg/makeDb/doc/hg16.txt
  • 1.10 lines changed: 14, context: html, text, full: html, text
    liftOver to hg19 done
• src/hg/makeDb/doc/hg17.txt
  • 1.121 lines changed: 12, context: html, text, full: html, text
    liftOver to hg19 done
• src/hg/makeDb/doc/hg19.txt
  • 1.8 lines changed: 3, context: html, text, full: html, text
    done with swap of chain/net to panTro2
  • 1.7 lines changed: 18, context: html, text, full: html, text
    running swap to panTro2 and make gc5Base download file
• src/hg/makeDb/doc/panTro2.txt
  • 1.14 lines changed: 16, context: html, text, full: html, text
    hg19 chain/net swap done
• src/hg/makeDb/schema/all.joiner
  • 1.705 lines changed: 16, context: html, text, full: html, text
    Fixup rules for hg19 non-split tables and ignore gold
• src/hg/makeDb/trackDb/chainHg19.html
  • 1.1 lines changed: 90, context: html, text, full: html, text
    For chains and nets of Hg19 on other organisms
• src/hg/makeDb/trackDb/netHg19.html
  • 1.1 lines changed: 86, context: html, text, full: html, text
    For chains and nets of Hg19 on other organisms
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.502 lines changed: 1, context: html, text, full: html, text
    Turn off score filter for Eran Segal Regulatory Module esRegGeneToMotif on yeast browsers
• src/hg/makeDb/trackDb/chimp/trackDb.ra
  • 1.16 lines changed: 24, context: html, text, full: html, text
    Adding hg19 chain and net to panTro2
• src/hg/makeDb/trackDb/human/hg19/chainSelf.html
  • 1.1 lines changed: 92, context: html, text, full: html, text
    Fixup chainSelf business
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.12 lines changed: 15, context: html, text, full: html, text
    Fixup chainSelf business