kate: changes by commit

review to branch (2009-04-21 to 2009-04-28) v205

• • src/hg/makeDb/doc/encodeDccHg18.txt 1.1 - lines changed: 9, context: html, text, full: html, text
• 1. Update phyloP LS track settings based on input from Adam 2. Add GERP cons for Javier at EBI (ENCODE-related)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.386 - lines changed: 45, context: html, text, full: html, text
• Add track description for Adam Siepel's lineage=specific phyloP
  • src/hg/makeDb/trackDb/human/hg18/phyloPConsLs44way.html 1.1 - lines changed: 67, context: html, text, full: html, text
• Coloring and labels work for Riken CAGE
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.257 - lines changed: 54, context: html, text, full: html, text
• Restore mistakenly commented out UW Dnase K562 signal tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.259 - lines changed: 39, context: html, text, full: html, text
• Change UW labels by request of John Stam
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.260 - lines changed: 13, context: html, text, full: html, text
• short labels and subtrack ordering adjustments to Riken CAGE
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.261 - lines changed: 169, context: html, text, full: html, text
• Tweak defaults on Riken CAGE
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.262 - lines changed: 1, context: html, text, full: html, text
• Fix label for Riken
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.263 - lines changed: 1, context: html, text, full: html, text
• Label tweak for PhyloP track, by request of Adam
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.388 - lines changed: 1, context: html, text, full: html, text
• Consistency
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.html 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html 1.10 - lines changed: 1, context: html, text, full: html, text
• Edit for clarity
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.html 1.8 - lines changed: 67, context: html, text, full: html, text
• Pull out raw signal from Riken (for now)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.264 - lines changed: 417, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncodeRikenRawSignal.ra 1.1 - lines changed: 436, context: html, text, full: html, text
• add ENCODE prefix to shortlabel in pushQ entry to alert Q/A
  • src/hg/encode/encodeLoad/doEncodeLoad.pl 1.63 - lines changed: 1, context: html, text, full: html, text