larrym: changes by file

review to branch (2009-04-21 to 2009-04-28) v205

• src/hg/bedItemOverlapCount/bedItemOverlapCount.c
  • 1.13 lines changed: 12, context: html, text, full: html, text
    modify code to support the normal two column chromSize file format
  • 1.12 lines changed: 28, context: html, text, full: html, text
    support -chromSize option
• src/hg/bedItemOverlapCount/makefile
  • 1.8 lines changed: 3, context: html, text, full: html, text
    add DESTDIR so we can add this to userApps
• src/hg/encode/encodeStatus/encodeStatus.pl
  • 1.8 lines changed: 1, context: html, text, full: html, text
    fix typo
  • 1.7 lines changed: 1, context: html, text, full: html, text
    use hgsql --host option instead of doing a ssh
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.90 lines changed: 3, context: html, text, full: html, text
    add colors
• src/hg/encode/encodeValidate/config/labs.ra
  • 1.6 lines changed: 1, context: html, text, full: html, text
    aampp => aamp
• src/hg/makeDb/hgLoadBed/hgLoadBed.c
  • 1.69 lines changed: 3, context: html, text, full: html, text
    fix mysql 'Commands out of sync' problem
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.270 lines changed: 11, context: html, text, full: html, text
    some HAMethylSeq colors
  • 1.269 lines changed: 3, context: html, text, full: html, text
    add some colors
• src/hg/utils/bedExtendRanges/makefile
  • 1.4 lines changed: 2, context: html, text, full: html, text
    add BINDIR so we can add this to userApps