markd: changes by file

review to branch (2009-04-21 to 2009-04-28) v205

• src/hg/makeDb/genbank/etc/ignore.idx
  • 1.93 lines changed: 1, context: html, text, full: html, text
    
• src/hg/makeDb/genbank/src/gbSanity/chkGbIndex.c
  • 1.5 lines changed: 3, context: html, text, full: html, text
    fixed bogus errors reported for NR refseqs
• src/hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.c
  • 1.13 lines changed: 10, context: html, text, full: html, text
    fixed bogus errors reported for NR refseqs
• src/hg/makeDb/genbank/src/gbSanity/chkSeqTbl.c
  • 1.3 lines changed: 4, context: html, text, full: html, text
    fixed bogus errors reported for NR refseqs
• src/hg/makeDb/trackDb/zebraFinch/taeGut1/trackDb.ra
  • 1.3 lines changed: 1, context: html, text, full: html, text
    fixed typo in description
• src/hg/utils/makefile
  • 1.13 lines changed: 2, context: html, text, full: html, text
    positionalTblCheck wasn't being and had code rot
• src/hg/utils/positionalTblCheck/positionalTblCheck.c
  • 1.2 lines changed: 4, context: html, text, full: html, text
    positionalTblCheck wasn't being and had code rot
• src/inc/gff3.h
  • 1.1 lines changed: 211, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/lib/gff3.c
  • 1.1 lines changed: 914, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/lib/makefile
  • 1.151 lines changed: 1, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/lib/tests/gff3Tester.c
  • 1.1 lines changed: 31, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/lib/tests/makefile
  • 1.35 lines changed: 21, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/lib/tests/input/errorCasesTest.gff3
  • 1.1 lines changed: 28, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/lib/tests/input/sacCerTest.gff3
  • 1.1 lines changed: 43, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/lib/tests/input/specialCasesTest.gff3
  • 1.1 lines changed: 9, context: html, text, full: html, text
    added initial implementation of gff3 parser. Still has some rough edges and problems due to ambiguities in the GFF3 specification
• src/parasol/gensub2/fancy.gsub
  • 1.1 lines changed: 3, context: html, text, full: html, text
    fix bug with lastDir2, made code more robust
• src/parasol/gensub2/fancy1.lst
  • 1.1 lines changed: 4, context: html, text, full: html, text
    fix bug with lastDir2, made code more robust
• src/parasol/gensub2/fancy2.lst
  • 1.1 lines changed: 4, context: html, text, full: html, text
    fix bug with lastDir2, made code more robust
• src/parasol/gensub2/gensub2.c
  • 1.13 lines changed: 11, context: html, text, full: html, text
    fix bug with lastDir2, made code more robust