src/inc/bigBed.h 1.12
1.12 2009/04/20 23:16:18 mikep
Index: src/inc/bigBed.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/inc/bigBed.h,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 4 -r1.11 -r1.12
--- src/inc/bigBed.h 16 Mar 2009 18:34:46 -0000 1.11
+++ src/inc/bigBed.h 20 Apr 2009 23:16:18 -0000 1.12
@@ -62,6 +62,18 @@
char *asFileName, /* If non-null points to a .as file that describes fields. */
char *outName); /* BigBed output file name. */
/* Convert tab-separated bed file to binary indexed, zoomed bigBed version. */
+void bigBedFileCreateDetailed(
+ char *inName, /* Input file in a tabular bed format <chrom><start><end> + whatever. */
+ boolean sorted, /* Input is already sorted */
+ char *chromSizes, /* Two column tab-separated file: <chromosome> <size>. */
+ int blockSize, /* Number of items to bundle in r-tree. 1024 is good. */
+ int itemsPerSlot, /* Number of items in lowest level of tree. 64 is good. */
+ bits16 definedFieldCount, /* Number of defined bed fields - 3-16 or so. 0 means all fields
+ * are the defined bed ones. */
+ char *asFileName, /* If non-null points to a .as file that describes fields. */
+ char *outName); /* BigBed output file name. */
+/* Convert tab-separated bed file to binary indexed, zoomed bigBed version. */
+
#endif /* BIGBED_H */