kent: changes by file

branch to review (2009-04-14 to 2009-04-21) v204

• src/hg/hgc/hgc.c
  • 1.1527 lines changed: 2, context: html, text, full: html, text
    Removing bedLoadNBin, which duplicated lots of code in bedLoadN for no good reason.
• src/hg/inc/bed.h
  • 1.55 lines changed: 260, context: html, text, full: html, text
    Separating out basicBed module from bed module, so that basicBed can live in src/lib and be clear that it has no database dependence.
  • 1.54 lines changed: 3, context: html, text, full: html, text
    Removing bedLoadNBin, which duplicated lots of code in bedLoadN for no good reason.
• src/hg/lib/bed.c
  • 1.65 lines changed: 1247, context: html, text, full: html, text
    Separating out basicBed module from bed module, so that basicBed can live in src/lib and be clear that it has no database dependence.
  • 1.64 lines changed: 43, context: html, text, full: html, text
    Removing bedLoadNBin, which duplicated lots of code in bedLoadN for no good reason.
• src/inc/asParse.h
  • 1.5 lines changed: 6, context: html, text, full: html, text
    Adding asTypesIsInt and asTypesIsFloating
• src/inc/basicBed.h
  • 1.1 lines changed: 266, context: html, text, full: html, text
    Separating out basicBed module from bed module, so that basicBed can live in src/lib and be clear that it has no database dependence.
• src/lib/asParse.c
  • 1.8 lines changed: 31, context: html, text, full: html, text
    Adding asTypesIsInt and asTypesIsFloating
• src/lib/basicBed.c
  • 1.1 lines changed: 1259, context: html, text, full: html, text
    Separating out basicBed module from bed module, so that basicBed can live in src/lib and be clear that it has no database dependence.
• src/lib/bigBed.c
  • 1.14 lines changed: 82, context: html, text, full: html, text
    Improving error detection of bedToBigBed.
• src/lib/common.c
  • 1.129 lines changed: 78, context: html, text, full: html, text
    Adding numerically away string compares.
• src/lib/linefile.c
  • 1.59 lines changed: 1, context: html, text, full: html, text
    Improving error message in lineFileNeedFullNum
• src/lib/makefile
  • 1.150 lines changed: 2, context: html, text, full: html, text
    Separating out basicBed module from bed module, so that basicBed can live in src/lib and be clear that it has no database dependence.
• src/utils/bigBedSummary/bigBedSummary.c
  • 1.5 lines changed: 1, context: html, text, full: html, text
    Fixed Wig that should be a Bed in usage message.