markd: changes by commit

branch to review (2009-04-14 to 2009-04-21) v204

• added taeGut1 N-SCAN
  • src/hg/makeDb/doc/taeGut1.txt 1.16 - lines changed: 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebraFinch/nscanGene.html 1.1 - lines changed: 68, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebraFinch/taeGut1/trackDb.ra 1.2 - lines changed: 8, context: html, text, full: html, text
• fixed test problem due to timing of processes
  • src/lib/tests/expected/pipelineWriteErr.err 1.3 - lines changed: 2, context: html, text, full: html, text
  • src/lib/tests/makefile 1.34 - lines changed: 6, context: html, text, full: html, text
• refactored alignment code to allow use of genome partitioning in other code. removed outdated iserver code
  • src/hg/makeDb/genbank/doc/config.html 1.24 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/genbank.conf 1.335 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/gbAlignIServerClean 1.6 - lines changed: 70, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/gbAlignIServerCopy 1.5 - lines changed: 90, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/gbAlignSetup 1.24 - lines changed: 175, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/gbAlignStep 1.24 - lines changed: 49, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/align/makefile 1.9 - lines changed: 2, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbCommon.pm 1.41 - lines changed: 8, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/py/genbank/GenomePartition.py 1.1 - lines changed: 159, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/py/genbank/GenomeSeqs.py 1.4 - lines changed: 29, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/py/genbank/__init__.py 1.3 - lines changed: 5, context: html, text, full: html, text
• fix bug with name when lastz input is a 2bit
  • src/hg/mouseStuff/lavToPsl/lavToPsl.c 1.11 - lines changed: 5, context: html, text, full: html, text
• fix bug where mgc/orfeone psl tables were not updated when clones were deleted from MGC
  • src/hg/makeDb/genbank/src/dbload/gbAlignTbl.c 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/dbload/gbAlignTbl.h 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/dbload/gbMetaData.c 1.48 - lines changed: 13, context: html, text, full: html, text
• fixed change on type of accession in refLink
  • src/hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.c 1.12 - lines changed: 2, context: html, text, full: html, text