rhead: changes by file

branch to review (2009-04-14 to 2009-04-21) v204

• java/src/edu/ucsc/genome/qa/cgiCheck/TrackCheck.java
  • 1.12 lines changed: 1, context: html, text, full: html, text
    Changed hard-coded hgwbeta to target.machine so that mysql machine is found in props file.
• java/src/edu/ucsc/genome/qa/cgiCheck/full.props
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Changed machine to hgsqlbeta, the new sql server that hgwbeta is using.
• java/src/edu/ucsc/genome/qa/cgiCheck/hgw1.props
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Changed machine to hgsqlbeta, the new sql server that hgwbeta is using.
• java/src/edu/ucsc/genome/qa/lib/HgConf.java
  • 1.3 lines changed: 4, context: html, text, full: html, text
    Honor HGDB_CONF environment variable.
• src/hg/makeDb/trackDb/cow/bosTau4/description.html
  • 1.9 lines changed: 3, context: html, text, full: html, text
    Fixed links to Baylor.
• src/utils/qa/doGenbankTests
  • 1.6 lines changed: 18, context: html, text, full: html, text
    Added xenoEst to featureBits and pslCheck lists, removed unused trackList variable, reordered checks so they match priority in hgTracks.
  • 1.5 lines changed: 17, context: html, text, full: html, text
    Added logic to check the database argument.