tdreszer: changes by file

branch to review (2009-04-14 to 2009-04-21) v204

• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • 1.62 lines changed: 4, context: html, text, full: html, text
    Added link to hgTrackUi into the preamble text.
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.178 lines changed: 4, context: html, text, full: html, text
    If dateSubmitted is ddf ctime, then dateRestricted should use the same.
  • 1.177 lines changed: 120, context: html, text, full: html, text
    Support for DDF level fragLength for Alignments to RawSignal. Now creating metadata setting for trackDb and new fileDb.ra
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.89 lines changed: 4, context: html, text, full: html, text
    HTC-116 was removed as this should be the already existing HCT-116
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.16 lines changed: 5, context: html, text, full: html, text
    Add fragLength so to be specified by replicate
• src/hg/hgTables/filterFields.c
  • 1.74 lines changed: 1, context: html, text, full: html, text
    I misunderstood what Jim Wanted. 'Limit data output to' some number of rows should work with bigWig
  • 1.73 lines changed: 9, context: html, text, full: html, text
    Exclude bigWig from option to limit data output to some number of rows
• src/hg/js/utils.js
  • 1.18 lines changed: 1, context: html, text, full: html, text
    validateInt had a bad error message when alpha was entered
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.254 lines changed: 14, context: html, text, full: html, text
    Updated to of UNC FAIRE peak tracks
  • 1.251 lines changed: 683, context: html, text, full: html, text
    A small number of new metadata tags and a very large number of changed ones. Turns out that the metadata generation code did not calc the dataUnrestricted properly
  • 1.249 lines changed: 218, context: html, text, full: html, text
    Added a lot more metadata settings for Most of Mike's tracks
  • 1.245 lines changed: 475, context: html, text, full: html, text
    Added a lot of metadata settings for Broad, Duke/UNC/UT-A, Elnitski, HudsunAlpha, Yale
• src/hg/utils/automation/Encode.pm
  • 1.40 lines changed: 1, context: html, text, full: html, text
    Added fileDb.ra definition