src/hg/hgc/hgc.c 1.1537
1.1537 2009/05/08 17:59:36 angie
doKomp: Added explicit inclusion of all targets for given gene, with the Design ID now appended to each gene name.
Index: src/hg/hgc/hgc.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgc/hgc.c,v
retrieving revision 1.1536
retrieving revision 1.1537
diff -b -B -U 4 -r1.1536 -r1.1537
--- src/hg/hgc/hgc.c 7 May 2009 18:05:52 -0000 1.1536
+++ src/hg/hgc/hgc.c 8 May 2009 17:59:36 -0000 1.1537
@@ -20795,18 +20795,28 @@
char *extraTable = trackDbSettingOrDefault(tdb, "xrefTable", "kompExtra");
boolean gotExtra = sqlTableExists(conn, extraTable);
if (gotExtra)
{
+ char mgiId[256];
safef(query, sizeof(query), "select alias from %s where name = '%s'",
extraTable, item);
+ sqlQuickQuery(conn, query, mgiId, sizeof(mgiId));
+ char *ptr = strchr(mgiId, ',');
+ if (!startsWith("MGI:", mgiId) || ptr == NULL)
+ errAbort("Where is the MGI ID?: '%s'", mgiId);
+ else
+ *ptr = '\0';
+ // Use the MGI ID to show all centers that are working on this gene:
+ safef(query, sizeof(query), "select name,alias from %s where alias like '%s,%%'",
+ extraTable, mgiId);
sr = sqlGetResult(conn, query);
char lastMgiId[16];
lastMgiId[0] = '\0';
puts("<TABLE BORDERWIDTH=0 CELLPADDING=0>");
while ((row = sqlNextRow(sr)) != NULL)
{
char *words[3];
- int wordCount = chopCommas(row[0], words);
+ int wordCount = chopCommas(row[1], words);
if (wordCount >= 3)
{
char *mgiId = words[0], *center = words[1], *status = words[2];
if (!sameString(mgiId, lastMgiId))
@@ -20818,8 +20828,11 @@
printf("</TD></TR>\n");
safecpy(lastMgiId, sizeof(lastMgiId), mgiId);
}
printf("<TR><TD><B>Center: </B>%s</TD>\n", center);
+ ptr = strrchr(row[0], '_');
+ if (ptr != NULL)
+ printf("<TD><B>Design ID: </B>%s</TD>\n", ptr+1);
printf("<TD><B>Status: </B>%s</TD></TR>\n", status);
}
}
puts("<TR><TD colspan=2>");