src/hg/makeDb/doc/hg18.txt 1.361

Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.360
retrieving revision 1.361
diff -b -B -U 4 -r1.360 -r1.361
--- src/hg/makeDb/doc/hg18.txt	8 May 2009 17:39:00 -0000	1.360
+++ src/hg/makeDb/doc/hg18.txt	11 May 2009 21:56:27 -0000	1.361
@@ -27326,5 +27326,18 @@
 
     hgsql hg18 < ensemblLift.sql
     hgsql hg18 \
 -e 'LOAD DATA LOCAL INFILE "ensemblLift.tab" INTO TABLE ensemblLift'
+
+##############################################################################
+# FOX2 CLUSTERS (DONE 2009-04-08, Andy)
+    cp cluster.combine.bed /hive/data/genomes/hg18/bed/fox2ClipSeq
+## (got the data as an attachment from Gene Yeo)
+    cd /hive/data/genomes/hg18/bed/fox2ClipSeq
+    grep chr cluster.combine.bed | cut -f1-4 | \
+      bedSort stdin fox2ClipClusters.hg17.bed
+    liftOver fox2ClipClusters.hg17.bed \
+      /gbdb/hg17/liftOver/hg17ToHg18.over.chain.gz \
+      fox2ClipClusters.bed unmapped.bed
+    hgLoadBed hg18 fox2ClipClusters{,.bed}
+
 ##############################################################################