src/utils/qa/activeGenbank.csh 1.7
1.7 2009/05/05 23:13:25 kuhn
added sqlrr variable where needed to set up for new machine testing
Index: src/utils/qa/activeGenbank.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/activeGenbank.csh,v
retrieving revision 1.6
retrieving revision 1.7
diff -b -B -U 4 -r1.6 -r1.7
--- src/utils/qa/activeGenbank.csh 11 Apr 2009 00:37:01 -0000 1.6
+++ src/utils/qa/activeGenbank.csh 5 May 2009 23:13:25 -0000 1.7
@@ -32,9 +32,9 @@
cat ~/kent/src/hg/makeDb/genbank/etc/rr.dbs | sort | sed -e '/^#/ d' \
> XXgenbankDbsXX
# this is the list of active DBs on the RR
-hgsql -N -h genome-centdb hgcentral -e "SELECT name FROM dbDb \
+hgsql -N -h $sqlrr hgcentral -e "SELECT name FROM dbDb \
WHERE active = 1 ORDER BY name;" > XXactiveDbsXX
# find out what's active and not getting a genbank update
# disregard those assemblies that are too old for updates