rhead: changes by file

review to branch (2009-05-05 to 2009-05-12) v206

• src/hg/hgLiftOver/hgLiftOver.c
  • 1.61 lines changed: 2, context: html, text, full: html, text
    Changed example double-lift from human to mouse, as we now have the direct lifts for the human example mentioned.
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • 1.98 lines changed: 1, context: html, text, full: html, text
    Added monDom5.
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.17 lines changed: 20, context: html, text, full: html, text
    Blocks that exist solely to pick up local html diffs are no longer needed.
  • 1.16 lines changed: 19, context: html, text, full: html, text
    Replaced visibility.ra settings for netPanTro2 and refGene tracks with track override visibility settings, and condensed chainPanTro2 block tojust the matrix and matrixHeader lines.
• src/hg/makeDb/trackDb/human/hg19/visibility.ra
  • 1.3 lines changed: 6, context: html, text, full: html, text
    Removing this file because visibility.ra and priority.ra have been superceded by track override in the regular trackDb.ra file.
• src/utils/qa/qaConfig.bash
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Keeping in sync with qaConfig.tcsh.