src/hg/encode/validateFiles/validateFiles.c 1.17
1.17 2009/05/04 19:36:03 tdreszer
fastq sequence names can have # in them.
Index: src/hg/encode/validateFiles/validateFiles.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/validateFiles/validateFiles.c,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 4 -r1.16 -r1.17
--- src/hg/encode/validateFiles/validateFiles.c 3 Apr 2009 17:11:08 -0000 1.16
+++ src/hg/encode/validateFiles/validateFiles.c 4 May 2009 19:36:03 -0000 1.17
@@ -113,9 +113,9 @@
for (i= (int)'A' ; i <= (int)'Z' ; ++i)
seqName[i] = seqName[i+(int)('a'-'A')] = alpha[i] = alpha[i+(int)('a'-'A')] = 1;
for (i= (int)'0' ; i <= (int)'9' ; ++i)
seqName[i] = digits[i] = csSeqName[i] = csQualChars[i] = 1;
-seqName['_'] = seqName['.'] = seqName[':'] = seqName['/'] = seqName['-'] = 1;
+seqName['_'] = seqName['.'] = seqName[':'] = seqName['/'] = seqName['-'] = seqName['#'] = 1;
csSeqName[','] = csSeqName['.'] = csSeqName['-'] = csSeqName['#'] = 1;
csQualChars[' '] = 1;
for (i= (int)'!' ; i <= (int)'~' ; ++i)
qualChars[i] = 1;