src/hg/hgTracks/cds.c 1.93

Index: src/hg/hgTracks/cds.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTracks/cds.c,v
retrieving revision 1.92
retrieving revision 1.93
diff -b -B -U 4 -r1.92 -r1.93
--- src/hg/hgTracks/cds.c	7 Apr 2009 17:31:01 -0000	1.92
+++ src/hg/hgTracks/cds.c	28 Apr 2009 23:40:24 -0000	1.93
@@ -103,10 +103,9 @@
 
 static int convertCoordUsingPsl( int s, struct psl *psl )
 /*return query position corresponding to target position in one 
  * of the coding blocks of a psl file, or return -1 if target position
- * is not in a coding exon of this psl entry or if the psl entry is
- * null*/
+ * is not in an exon of this psl entry*/
 {
 int i;
 int idx = -1;
 unsigned *qStarts = psl->qStarts;
@@ -132,9 +131,9 @@
     tEnd = tStart + psl->blockSizes[i];
     if (psl->strand[1] == '-') 
          reverseUnsignedRange(&tStart, &tEnd, psl->tSize);
 
-    if (s >= tStart-3 && s < tEnd)
+    if (s >= tStart && s < tEnd)
 	{
 	idx = i;
 	break;
 	}
@@ -1344,8 +1343,10 @@
 else
     {
     /*show we have an error by coloring entire exon block yellow*/
     drawScaledBox(hvg, s, e, scale, xOff, y, heightPer, MG_YELLOW);
+    // FIXME: this shouldn't ever happen, should be an errAbort
+    warn("Bug: drawDiffTextBox: convertCoordUsingPsl failed<br>\n");
     }
 }
 
 void baseColorDrawItem(struct track *tg,  struct linkedFeatures *lf, 
@@ -1438,8 +1439,10 @@
 	else
 	    {
 	    /*show we have an error by coloring entire exon block yellow*/
 	    drawScaledBox(hvg, s, e, scale, xOff, y, heightPer, MG_YELLOW);
+            // FIXME: this shouldn't ever happen, should be an errAbort
+            warn("Bug: drawCdsDiffCodonsOnly: convertCoordUsingPsl failed<br>\n");
 	    }
 	}
     }
 }