src/hg/makeDb/schema/all.joiner 1.710

Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.709
retrieving revision 1.710
diff -b -B -U 4 -r1.709 -r1.710
--- src/hg/makeDb/schema/all.joiner	24 Apr 2009 16:53:08 -0000	1.709
+++ src/hg/makeDb/schema/all.joiner	1 May 2009 23:43:43 -0000	1.710
@@ -544,32 +544,24 @@
 "Link together Yale Pseudogenes and class"
     $hg.encodePseudogeneYale.name
     $hg.encodePseudogeneClass.name minCheck=0.16 unique
 
-identifier wgEncodeGencodeAutoRel1 dependency
-"Link together Gencode gene model (Known) and class for Mar 07 Data Version"
-    $hg.wgEncodeGencodeAutoRel1.name
-    $hg.wgEncodeGencodeClassesRel1.name minCheck=0.83 unique
-
-identifier wgEncodeGencodeManualRel1 dependency
-"Link together Gencode gene model (Known) and class for Mar 07 Data Version"
-    $hg.wgEncodeGencodeManualRel1.name
-    $hg.wgEncodeGencodeClassesRel1.name minCheck=0.83 unique
-
-identifier wgEncodeGencodeAutoRel2 dependency
-"Link together Gencode gene model (Known) and class for Jan 2009 Data Version"
-    $hg.wgEncodeGencodeAutoRel2.name
-    $hg.wgEncodeGencodeClassesRel2.name minCheck=0.83 unique
-
-identifier wgEncodeGencodeManualRel2 dependency
+identifier wgEncodeNhgriBip
 "Link together Gencode gene model (Known) and class for Jan 2009 Data Version"
-    $hg.wgEncodeGencodeManualRel2.name
-    $hg.wgEncodeGencodeClassesRel2.name minCheck=0.83 unique
+    hg18.wgEncodeNhgriBip.name dupeOk
+    panTro2.wgEncodeNhgriBip.name
+    rheMac2.wgEncodeNhgriBip.name
+    mm9.wgEncodeNhgriBip.name
+    rn4.wgEncodeNhgriBip.name
+    canFam2.wgEncodeNhgriBip.name
+    bosTau4.wgEncodeNhgriBip.name
 
-identifier wgEncodeGencodePolyaRel2 dependency
+identifier wgEncodeGencodeClassesRel2
 "Link together Gencode gene model (Known) and class for Jan 2009 Data Version"
-    $hg.wgEncodeGencodePolyaRel2.name
-    $hg.wgEncodeGencodeClassesRel2.name minCheck=0.83 unique
+    hg18.wgEncodeGencodeClassesRel2.name
+    hg18.wgEncodeGencodeAutoRel2.name unique
+    hg18.wgEncodeGencodeManualRel2.name unique
+    hg18.wgEncodeGencodePolyaRel2.name unique
 
 identifier acemblyName dependency
 "Link together Acembly gene model structure and peptide."
     $hg,$mm.acembly.name
@@ -1244,8 +1236,10 @@
     hg17.spMrna.mrnaID minCheck=0.50
     hg17.dupSpMrna.mrnaID minCheck=0.40
     hg17.dupSpMrna.dupMrnaID minCheck=0.20
     hg18.ccdsInfo.mrnaAcc chopAfter=. minCheck=0.37
+#    hg18.wgEncodeGencodeManualRel2.name
+#    hg18.wgEncodeGencodeAutoRel2.name
 
 identifier xenoRefSeqId typeOf=xenoMrnaAccession
 "Other Species RefSeq mRNA accession"
     $xrg.xenoRefGene.name dupeOk