angie: changes by commit

branch to review (2009-04-28 to 2009-05-05) v205

• Added ctgPos search with termRegex for new contig names.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.13 - lines changed: 8, context: html, text, full: html, text
• Also need a ctgPosNoVersion search (can't expect everyone to always include the .1).
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.14 - lines changed: 10, context: html, text, full: html, text
• Fixed another couple off-by-one problems with insertion lines on the right end of thick portion (thanks Brooke!).
  • src/hg/hgTracks/cds.c 1.94 - lines changed: 6, context: html, text, full: html, text
• Remove the working directory after generating images, because the cleaner script does not remove empty dirs (Thx Hiram).
  • src/hg/hgc/hgdpClick.c 1.7 - lines changed: 24, context: html, text, full: html, text
• Performance/memory leak fix: move hTrackDbForTrack (and bedItemRgb, thanks Tim) out of the inner loop of doGetBedOrCt.
  • src/hg/hgTables/bedList.c 1.67 - lines changed: 2, context: html, text, full: html, text