pchan: changes by file

branch to review (2009-04-28 to 2009-05-05) v205

• src/hg/archaeStuff/data/Genome-info-meta
  • 1.3 lines changed: 2, context: html, text, full: html, text
    add natrMaga0; fix multiz for vulcDist0 and joseCoat_042308
• src/hg/archaeStuff/data/Genome-info-mods
  • 1.66 lines changed: 54, context: html, text, full: html, text
    add natrMaga0; fix multiz for vulcDist0 and joseCoat_042308
• src/hg/archaeStuff/data/blat-servers.tab
  • 1.1 lines changed: 6, context: html, text, full: html, text
    blat server host config
• src/hg/archaeStuff/data/precomputed-tracks.tab
  • 1.2 lines changed: 1, context: html, text, full: html, text
    add pog reads
• src/hg/archaeStuff/scripts/make-browser-2.0
  • 1.41 lines changed: 6, context: html, text, full: html, text
    add mblastx for metagenomes
• src/hg/archaeStuff/scripts/archaeBrowser/Blast.pm
  • 1.16 lines changed: 377, context: html, text, full: html, text
    add mblastx for metagenomes
• src/hg/archaeStuff/scripts/archaeBrowser/Constant.pm
  • 1.32 lines changed: 4, context: html, text, full: html, text
    allow comments in blat server file and precomputed track file
  • 1.31 lines changed: 41, context: html, text, full: html, text
    extract blat server host to separate file
• src/hg/archaeStuff/scripts/archaeBrowser/OrganismDb.pm
  • 1.30 lines changed: 7, context: html, text, full: html, text
    add mblastx for metagenomes
• src/hg/archaeStuff/scripts/archaeBrowser/PrecomputedTrack.pm
  • 1.9 lines changed: 3, context: html, text, full: html, text
    allow comments in blat server file and precomputed track file
• src/hg/makeDb/trackDb/lowelab/trackDb.ra
  • 1.74 lines changed: 237, context: html, text, full: html, text
    add blastx tracks
  • 1.73 lines changed: 19, context: html, text, full: html, text
    add track Pog 454 reads; add scaffold name searching