src/hg/hgTables/microarrayTables.c 1.5
1.5 2009/05/20 20:59:56 mikep
Libified findTdbForTable, findTypeForTable, trackIsType, hIsBigBed from hgTables so that other code can easily determine if a track is a bigBed.
Index: src/hg/hgTables/microarrayTables.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTables/microarrayTables.c,v
retrieving revision 1.4
retrieving revision 1.5
diff -b -B -U 1000000 -r1.4 -r1.5
--- src/hg/hgTables/microarrayTables.c 11 May 2009 18:59:58 -0000 1.4
+++ src/hg/hgTables/microarrayTables.c 20 May 2009 20:59:56 -0000 1.5
@@ -1,41 +1,41 @@
/* Stuff to handle microarray tables */
#include "common.h"
#include "hash.h"
#include "linefile.h"
#include "trackDb.h"
#include "customTrack.h"
#include "microarray.h"
#include "hgTables.h"
boolean isMicroarray(struct trackDb *parent, char *table)
/* Return TRUE if table is specified as a microarray in the current database's
* trackDb. */
{
-struct trackDb *tdb = findTdbForTable(database, parent, table);
+struct trackDb *tdb = findTdbForTable(database, parent, table, ctLookupName);
return (tdb && (startsWith("expRatio", tdb->type) || startsWith("array", tdb->type)));
}
void doOutMicroarrayNames(struct trackDb *tdb)
/* Show the microarray names from .ra file */
{
struct microarrayGroups *allGroups;
if (anyIntersection())
errAbort("Can't do microarray names output when intersection is on. "
"Please go back and select another output type (BED or custom track is good), or clear the intersection.");
allGroups = maGetTrackGroupings(database, tdb);
if (allGroups)
{
struct maGrouping *allArrays = allGroups->allArrays;
int i;
if (allArrays)
{
textOpen();
printf("#expId\tname\n");
for (i = 0; i < allArrays->size; i++)
{
printf("%d\t%s\n", allArrays->expIds[i], allArrays->names[i]);
}
}
}
}