rhead: changes by file

review to branch (2009-05-19 to 2009-05-26) v207

• src/hg/makeDb/trackDb/chainMonDom5.html
  • 1.1 lines changed: 84, context: html, text, full: html, text
    Added top-level trackDb blocks and html files for monDom5 nets and chains.
• src/hg/makeDb/trackDb/netMonDom5.html
  • 1.1 lines changed: 80, context: html, text, full: html, text
    Added top-level trackDb blocks and html files for monDom5 nets and chains.
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.506 lines changed: 24, context: html, text, full: html, text
    Added top-level trackDb blocks and html files for monDom5 nets and chains.
• src/hg/makeDb/trackDb/worm/ce6/description.html
  • 1.5 lines changed: 5, context: html, text, full: html, text
    Switched to a generic link to wormbase instead of the ws190 link until the old one is functioning again.
• src/hg/makeDb/trackDb/worm/ce6/gap.html
  • 1.3 lines changed: 5, context: html, text, full: html, text
    Switched to a generic link to wormbase instead of the ws190 link until the old one is functioning again.
• src/hg/makeDb/trackDb/worm/ce6/gold.html
  • 1.3 lines changed: 5, context: html, text, full: html, text
    Switched to a generic link to wormbase instead of the ws190 link until the old one is functioning again.
• src/hg/makeDb/trackDb/zebrafish/trackDb.ra
  • 1.50 lines changed: 6, context: html, text, full: html, text
    Added priorities for monDom5 net and chain.
• src/utils/qa/chain.csh
  • 1.24 lines changed: 12, context: html, text, full: html, text
    Changed getChromlist.csh so that it does not create a file, just prints results. Changed all of the scripts that call it to redirect output to a unique file name, and then remove only that file at the end. Added onintr command that allow for cleanup of files created if scripts are ended prematurely.
• src/utils/qa/chain2.csh
  • 1.10 lines changed: 17, context: html, text, full: html, text
    Changed getChromlist.csh so that it does not create a file, just prints results. Changed all of the scripts that call it to redirect output to a unique file name, and then remove only that file at the end. Added onintr command that allow for cleanup of files created if scripts are ended prematurely.
• src/utils/qa/getChromlist.csh
  • 1.6 lines changed: 12, context: html, text, full: html, text
    Changed getChromlist.csh so that it does not create a file, just prints results. Changed all of the scripts that call it to redirect output to a unique file name, and then remove only that file at the end. Added onintr command that allow for cleanup of files created if scripts are ended prematurely.
• src/utils/qa/makeFilledBlockBed.csh
  • 1.5 lines changed: 8, context: html, text, full: html, text
    Changed getChromlist.csh so that it does not create a file, just prints results. Changed all of the scripts that call it to redirect output to a unique file name, and then remove only that file at the end. Added onintr command that allow for cleanup of files created if scripts are ended prematurely.
• src/utils/qa/net.csh
  • 1.19 lines changed: 5, context: html, text, full: html, text
    Changed getChromlist.csh so that it does not create a file, just prints results. Changed all of the scripts that call it to redirect output to a unique file name, and then remove only that file at the end. Added onintr command that allow for cleanup of files created if scripts are ended prematurely.
• src/utils/qa/runBits.csh
  • 1.16 lines changed: 8, context: html, text, full: html, text
    Changed getChromlist.csh so that it does not create a file, just prints results. Changed all of the scripts that call it to redirect output to a unique file name, and then remove only that file at the end. Added onintr command that allow for cleanup of files created if scripts are ended prematurely.