src/utils/qa/getSplit.csh 1.10
1.10 2009/05/12 23:48:03 kuhn
simplified and dropped some variables. caught error state where table does not exist either split or unsplit
Index: src/utils/qa/getSplit.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/getSplit.csh,v
retrieving revision 1.9
retrieving revision 1.10
diff -b -B -U 4 -r1.9 -r1.10
--- src/utils/qa/getSplit.csh 11 May 2009 23:59:13 -0000 1.9
+++ src/utils/qa/getSplit.csh 12 May 2009 23:48:03 -0000 1.10
@@ -66,32 +66,32 @@
# get all assemblies containing $tablename
set chrom=""
set split=""
-set isChromInfo=0
# check for chromInfo table
-set isChromInfo=`hgsql -N $host -e 'SHOW TABLES' $db | grep "chromInfo" \
- | wc -l`
- if ( $status ) then
- echo "$0 defaults to hgwbeta. also check spelling of database"
- echo
- exit 1
- endif
-if ( $isChromInfo > 0 ) then
+hgsql -N $host -e 'SHOW TABLES' $db | grep -qw "chromInfo"
+if ( ! $status ) then
set chrom=`hgsql -N $host -e 'SELECT chrom FROM chromInfo LIMIT 1' $db`
-
# check if split table
- set split=`hgsql -N $host -e 'SHOW TABLES LIKE "'${chrom}_$tablename'"' \
- $db | wc -l`
- if ( $split == 1 ) then
+ hgsql -N $host -e 'SHOW TABLES' $db | grep -qw $tablename
+ if ( ! $status ) then
+ echo "unsplit"
+ else
+ hgsql -N $host -e 'SHOW TABLES' $db | grep -qw ${chrom}_$tablename
+ if ( ! $status ) then
echo "$chrom"
else
- echo "unsplit"
+ echo
+ echo " no such table $tablename or ${chrom}_$tablename."
+ echo
+ exit 1
+ endif
endif
exit 0
else
- echo "no chromInfo table. split irrelevant"
+ echo
+ echo "no chromInfo table for $db on ${machine}."
+ echo
exit 1
endif
-echo