src/utils/qa/getSplit.csh 1.10

Index: src/utils/qa/getSplit.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/getSplit.csh,v
retrieving revision 1.9
retrieving revision 1.10
diff -b -B -U 1000000 -r1.9 -r1.10
--- src/utils/qa/getSplit.csh	11 May 2009 23:59:13 -0000	1.9
+++ src/utils/qa/getSplit.csh	12 May 2009 23:48:03 -0000	1.10
@@ -1,97 +1,97 @@
 #!/bin/tcsh
 source `which qaConfig.csh`
 
 #######################
 #
 #  01-17-06
 #  determines if table is in split format and returns split name if so
 #  pulled out of getAssebmlies.csh
 #  Robert Kuhn
 #
 #######################
 
 set tablename=""
 set machine="hgwdev"
 set host=""
 set db=""
 
 if ( $#argv < 2 || $#argv > 3 ) then
   echo
   echo "  determines if table is in split format "
   echo "    and returns split name if so."
   echo
   echo "    usage:  db tablename [hgwdev | hgsqlbeta]"
   echo
   echo "      third argument accepts machine, defaults to hgwdev"
   echo
   exit
 else
   set db=$argv[1]
   set tablename=$argv[2]
 endif
 
 if ( "$HOST" != "hgwdev" ) then
  echo "\n error: you must run this script from dev!\n"
  exit 1
 endif
 
 # assign command line arguments
 if ( $#argv == 3 ) then
   if ( $argv[3] == "hgsqlbeta" ) then
     set machine="$argv[3]"
     set host="-h $sqlbeta"
   else
     if ( $argv[3] != "hgwdev" ) then
       echo "only hgwdev and hgwbeta are allowed in $0."
       exit 1
     endif
   endif
 endif
 
 # echo "db = $db"
 # echo "tablename = $tablename"
 # echo "machine = $machine"
 # echo "host = $host"
 
 # check machine validity
 
 checkMachineName.csh $machine
 if ( $status ) then
   echo "${0}:"
   $0
   exit 1
 endif
 
 # -------------------------------------------------
 # get all assemblies containing $tablename
 
 set chrom=""
 set split=""
-set isChromInfo=0
 
 # check for chromInfo table
-set isChromInfo=`hgsql -N $host -e 'SHOW TABLES' $db | grep "chromInfo" \
-   | wc -l`
-  if ( $status ) then
-    echo "$0 defaults to hgwbeta.  also check spelling of database"
-    echo
-    exit 1
-  endif
-if ( $isChromInfo > 0 ) then
+hgsql -N $host -e 'SHOW TABLES' $db | grep -qw "chromInfo" 
+if ( ! $status ) then
   set chrom=`hgsql -N $host -e 'SELECT chrom FROM chromInfo LIMIT 1' $db`
-
   # check if split table
-  set split=`hgsql -N $host -e 'SHOW TABLES LIKE "'${chrom}_$tablename'"' \
-    $db | wc -l`
-  if ( $split == 1 ) then
+  hgsql -N $host -e 'SHOW TABLES' $db | grep -qw $tablename 
+  if ( ! $status ) then
+    echo "unsplit"
+  else
+    hgsql -N $host -e 'SHOW TABLES' $db | grep -qw ${chrom}_$tablename 
+    if ( ! $status ) then
     echo "$chrom"
   else 
-    echo "unsplit"
+      echo
+      echo " no such table $tablename or ${chrom}_$tablename."
+      echo
+      exit 1
+    endif
   endif
   exit 0
 else
-  echo "no chromInfo table.  split irrelevant"
+  echo
+  echo "no chromInfo table for $db on ${machine}."
+  echo
   exit 1
 endif
-echo