src/hg/archaeStuff/data/Genome-info-euk 1.15
1.15 2009/06/08 19:11:15 pchan
update zebrafish to v8
Index: src/hg/archaeStuff/data/Genome-info-euk
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/archaeStuff/data/Genome-info-euk,v
retrieving revision 1.14
retrieving revision 1.15
diff -b -B -U 4 -r1.14 -r1.15
--- src/hg/archaeStuff/data/Genome-info-euk 26 Jan 2009 06:33:02 -0000 1.14
+++ src/hg/archaeStuff/data/Genome-info-euk 8 Jun 2009 19:11:15 -0000 1.15
@@ -168,17 +168,17 @@
Trna_abr: equCab1-tRNAs
Gen_seq: /projects/lowelab/db/genomes/Euk/equCab1/equCab1-genome.fa
Org_abr: Dreri
-Org_name: Danio rerio (Zebrafish) (danRer5 July 2007)
+Org_name: Danio rerio (Zebrafish) (Zv8 Apr 2009)
Domain: Eukaryota
-DB_name: danRer5
+DB_name: danRer_v8
Tax_ID: 7955: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio.
-Web_seq: http://hgdownload.cse.ucsc.edu/downloads.html#zebrafish
-Web_db: http://genome.ucsc.edu/cgi-bin/hgTracks?clade=vertebrate&org=Zebrafish
+Web_seq: ftp://ftp.ensembl.org/pub/assembly/zebrafish/Zv8release/
+Web_db: http://www.sanger.ac.uk/Projects/D_rerio/Zv8_assembly_information.shtml
Trna_opt: -o# -f# -m# -F# -Hy
-Trna_abr: danRer5-tRNAs
-Gen_seq: /projects/lowelab/db/genomes/Euk/danRer5/danRer5-genome.fa
+Trna_abr: danRer_v8-tRNAs
+Gen_seq: /projects/lowelab/db/genomes/Euk/danRer_v8/danRer_v8-genome.fa
Org_abr: Frubr
Org_name: Takifugu rubripes (fr2 Oct 2004)
Domain: Eukaryota