src/hg/inc/snp125CodingCoordless.h 1.1

Index: src/hg/inc/snp125CodingCoordless.h
===================================================================
RCS file: src/hg/inc/snp125CodingCoordless.h
diff -N src/hg/inc/snp125CodingCoordless.h
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/inc/snp125CodingCoordless.h	4 Jun 2009 20:18:02 -0000	1.1
@@ -0,0 +1,70 @@
+/* snp125CodingCoordless.h was originally generated by the autoSql program, which also 
+ * generated snp125CodingCoordless.c and snp125CodingCoordless.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef SNP125CODINGCOORDLESS_H
+#define SNP125CODINGCOORDLESS_H
+
+#define SNP125CODINGCOORDLESS_NUM_COLS 8
+
+enum snp125CodingCoordlessFrame
+    {
+    snp125CodingCoordless1 = 0,
+    snp125CodingCoordless2 = 1,
+    snp125CodingCoordless3 = 2,
+    };
+struct snp125CodingCoordless
+/* Annotations of the effects of SNPs on translated protein sequence. */
+    {
+    struct snp125CodingCoordless *next;  /* Next in singly linked list. */
+    char *name;	/* Reference SNP identifier */
+    char *transcript;	/* Accession of the transcript modified by SNP */
+    enum snp125CodingCoordlessFrame frame;	/* Frame of transcript's codon modified by SNP */
+    int alleleCount;	/* Number of annotated alleles for SNP */
+    unsigned short *funcCodes;	/* dbSNP function codes (e.g. 42=missense) */
+    char **alleles;	/* Observed nucleotide alleles corresponding to funcCodes */
+    char **codons;	/* Codons corresponding to funcCodes */
+    char **peptides;	/* Amino acid sequence corresponding to funcCodes */
+    };
+
+struct snp125CodingCoordless *snp125CodingCoordlessLoad(char **row);
+/* Load a snp125CodingCoordless from row fetched with select * from snp125CodingCoordless
+ * from database.  Dispose of this with snp125CodingCoordlessFree(). */
+
+struct snp125CodingCoordless *snp125CodingCoordlessLoadAll(char *fileName);
+/* Load all snp125CodingCoordless from whitespace-separated file.
+ * Dispose of this with snp125CodingCoordlessFreeList(). */
+
+struct snp125CodingCoordless *snp125CodingCoordlessLoadAllByChar(char *fileName, char chopper);
+/* Load all snp125CodingCoordless from chopper separated file.
+ * Dispose of this with snp125CodingCoordlessFreeList(). */
+
+#define snp125CodingCoordlessLoadAllByTab(a) snp125CodingCoordlessLoadAllByChar(a, '\t');
+/* Load all snp125CodingCoordless from tab separated file.
+ * Dispose of this with snp125CodingCoordlessFreeList(). */
+
+struct snp125CodingCoordless *snp125CodingCoordlessCommaIn(char **pS, struct snp125CodingCoordless *ret);
+/* Create a snp125CodingCoordless out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new snp125CodingCoordless */
+
+void snp125CodingCoordlessFree(struct snp125CodingCoordless **pEl);
+/* Free a single dynamically allocated snp125CodingCoordless such as created
+ * with snp125CodingCoordlessLoad(). */
+
+void snp125CodingCoordlessFreeList(struct snp125CodingCoordless **pList);
+/* Free a list of dynamically allocated snp125CodingCoordless's */
+
+void snp125CodingCoordlessOutput(struct snp125CodingCoordless *el, FILE *f, char sep, char lastSep);
+/* Print out snp125CodingCoordless.  Separate fields with sep. Follow last field with lastSep. */
+
+#define snp125CodingCoordlessTabOut(el,f) snp125CodingCoordlessOutput(el,f,'\t','\n');
+/* Print out snp125CodingCoordless as a line in a tab-separated file. */
+
+#define snp125CodingCoordlessCommaOut(el,f) snp125CodingCoordlessOutput(el,f,',',',');
+/* Print out snp125CodingCoordless as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+#endif /* SNP125CODINGCOORDLESS_H */
+