src/hg/lib/snp125CodingCoordless.sql 1.1

Index: src/hg/lib/snp125CodingCoordless.sql
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RCS file: src/hg/lib/snp125CodingCoordless.sql
diff -N src/hg/lib/snp125CodingCoordless.sql
--- /dev/null	1 Jan 1970 00:00:00 -0000
+++ src/hg/lib/snp125CodingCoordless.sql	4 Jun 2009 20:18:02 -0000	1.1
@@ -0,0 +1,18 @@
+# snp125CodingCoordless.sql was originally generated by the autoSql program, which also 
+# generated snp125CodingCoordless.c and snp125CodingCoordless.h.  This creates the database representation of
+# an object which can be loaded and saved from RAM in a fairly 
+# automatic way.
+
+#Annotations of the effects of SNPs on translated protein sequence.
+CREATE TABLE snp125CodingCoordless (
+    name varchar(255) not null,	# Reference SNP identifier
+    transcript varchar(255) not null,	# Accession of the transcript modified by SNP
+    frame enum("1", "2", "3")  not null,	# Frame of transcript's codon modified by SNP
+    alleleCount int not null,	# Number of annotated alleles for SNP
+    funcCodes longblob not null,	# dbSNP function codes (e.g. 42=missense)
+    alleles longblob not null,	# Observed nucleotide alleles corresponding to funcCodes
+    codons longblob not null,	# Codons corresponding to funcCodes
+    peptides longblob not null,	# Amino acid sequence corresponding to funcCodes
+              #Indices
+    INDEX(name)
+);