src/hg/makeDb/schema/all.joiner 1.717

Index: src/hg/makeDb/schema/all.joiner
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/schema/all.joiner,v
retrieving revision 1.716
retrieving revision 1.717
diff -b -B -U 4 -r1.716 -r1.717
--- src/hg/makeDb/schema/all.joiner	26 May 2009 22:50:54 -0000	1.716
+++ src/hg/makeDb/schema/all.joiner	4 Jun 2009 22:36:14 -0000	1.717
@@ -1966,14 +1966,30 @@
 "SNP annotations"
     $snpDb125.snp125.name dupeOk
     $snpDb125.snp125Exceptions.name
     $snpDb125.snpSeq.acc minCheck=.8
+    hg17.snpArrayAffy10.rsId minCheck=0.98
+    hg17.snpArrayAffy10v2.rsId minCheck=0.98
+    hg17.snpArrayAffy250Nsp.rsId minCheck=0.98
+    hg17.snpArrayAffy250Sty.rsId minCheck=0.98
+    hg17.snpArrayAffy50HindIII.rsId minCheck=0.98
+    hg17.snpArrayAffy50XbaI.rsId minCheck=0.98
+    hg17.snpArrayIllumina300.name
 
 identifier snpAnnotations126
 "SNP annotations"
     $snpDb126.snp126.name dupeOk
     $snpDb126.snp126Exceptions.name
     $snpDb126.snpSeq.acc minCheck=.8
+    hg18.snp126ortho.name
+    hg18.snp126orthoPanTro2RheMac2.name
+    hg18.snpArrayAffy5.rsId minCheck=0.98
+    hg18.snpArrayAffy6.rsId minCheck=0.98
+    hg18.snpArrayAffy250Nsp.rsId
+    hg18.snpArrayAffy250Sty.rsId
+    hg18.snpArrayIllumina300.name
+    hg18.snpArrayIllumina550.name
+    hg18.snpArrayIllumina650.name
 
 identifier snpAnnotations127
 "SNP annotations"
     $snpDb127.snp127.name dupeOk
@@ -1984,8 +2000,9 @@
 "dbSNP version 128 rs* identifiers"
     $gbd.snp128.name dupeOk
     $gbd.snp128Exceptions.name
     $gbd.snp128Seq.acc minCheck=.9
+    hg18.snp128OrthoPanTro2RheMac2.name
 
 identifier snpExceptions128
 "Annotations of unusual conditions in dbSNP version 128"
     $gbd.snp128ExceptionDesc.exception
@@ -1995,8 +2012,10 @@
 "dbSNP version 129 rs* identifiers"
     $gbd.snp129.name dupeOk
     $gbd.snp129Exceptions.name minCheck=.99
     $gbd.snp129Seq.acc minCheck=.99
+    hg18.snp129OrthoPt2Pa2Rm2.name
+    hg18.snpArrayIllumina1M.name minCheck=0.95
 
 identifier snpExceptions129
 "Annotations of unusual conditions in dbSNP version 129"
     $gbd.snp129ExceptionDesc.exception
@@ -2006,62 +2025,16 @@
 "dbSNP version 130 rs* identifiers"
     $gbd.snp130.name dupeOk
     $gbd.snp130Exceptions.name
     $gbd.snp130Seq.acc minCheck=.98
+    $gbd.snp130CodingDbSnp.name minCheck=.99
+    $hg.snp130OrthoPt2Pa2Rm2.name
 
 identifier snpExceptions130
 "Annotations of unusual conditions in dbSNP version 130"
     $gbd.snp130ExceptionDesc.exception
     $gbd.snp130Exceptions.exception
 
-identifier snpArrayHg17
-"SNP array track for hg17"
-    hg17.snp125.name dupeOk
-    hg17.snpArrayAffy10.rsId minCheck=0.98
-    hg17.snpArrayAffy10v2.rsId minCheck=0.98
-    hg17.snpArrayAffy250Nsp.rsId minCheck=0.98
-    hg17.snpArrayAffy250Sty.rsId minCheck=0.98
-    hg17.snpArrayAffy50HindIII.rsId minCheck=0.98
-    hg17.snpArrayAffy50XbaI.rsId minCheck=0.98
-    hg17.snpArrayIllumina300.name
-
-identifier snpArrayHg18
-"SNP array track for hg18"
-    hg18.snp126.name dupeOk
-    hg18.snpArrayAffy5.rsId minCheck=0.98
-    hg18.snpArrayAffy6.rsId minCheck=0.98
-    hg18.snpArrayAffy250Nsp.rsId
-    hg18.snpArrayAffy250Sty.rsId
-    hg18.snpArrayIllumina300.name
-    hg18.snpArrayIllumina550.name
-    hg18.snpArrayIllumina650.name
-
-identifier snp129ArrayHg18
-"SNP array track for hg18"
-    hg18.snp129.name dupeOk
-    hg18.snpArrayIllumina1M.name minCheck=0.95
-
-identifier snpOrtho126
-"Ortho SNPs for hg18 only (dbSNP 126)"
-    hg18.snp126.name dupeOk
-    hg18.snp126ortho.name
-    hg18.snp126orthoPanTro2RheMac2.name
-
-identifier snpOrtho128
-"Ortho SNPs for hg18 only (dbSNP 128)"
-    hg18.snp128.name dupeOk
-    hg18.snp128OrthoPanTro2RheMac2.name
-
-identifier snpOrtho129
-"Ortho SNPs for hg18 only (dbSNP 129)"
-    hg18.snp129.name dupeOk
-    hg18.snp129OrthoPt2Pa2Rm2.name
-
-identifier snpOrtho130
-"Ortho SNPs for hg18 only (dbSNP 130)"
-    hg18.snp130.name dupeOk
-    hg18.snp130OrthoPt2Pa2Rm2.name
-
 # Other NCBI Identifiers
 
 identifier locusLinkId external=LocusLink
 "NCBI LocusLink ID"