src/hg/makeDb/trackDb/makefile 1.268
1.268 2009/06/05 15:20:04 hiram
Adding canFamPoodle1 to the build, Craig Venter's poodle "Shadow"
Index: src/hg/makeDb/trackDb/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/makefile,v
retrieving revision 1.267
retrieving revision 1.268
diff -b -B -U 1000000 -r1.267 -r1.268
--- src/hg/makeDb/trackDb/makefile 13 May 2009 20:36:10 -0000 1.267
+++ src/hg/makeDb/trackDb/makefile 5 Jun 2009 15:20:04 -0000 1.268
@@ -1,129 +1,129 @@
# Make your private trackDb with
# make update
# Make it for genome-test with
# make alpha
# Make your private trackDb on local host (if defined as localDB.XXX=XXX in .hg.conf) with
# make updateLocal
# Make non-private trackDb on local host (if defined as localDB.XXX=XXX in .hg.conf) with
# make alphaLocal
# Browser supports multiple trackDb's so that individual developers
# can change things rapidly without stepping on other people's toes.
# Usually when updating it is best to update your own trackDb and
# test it to make sure it works and that you have cvs updated all
# of trackDb/ before doing a make alpha. Note that you
# must specify which trackDb you are using in your .hg.conf file
# or in the cgi-bin-$(USER)/hg.conf file. Something like:
# db.trackDb=trackDb_YourUserName
# note: new group ARCHIVED_DBS created for assemblies still needed
# to support Conservation tracks in other assemblies. These should
# have only chromInfo table on hgwbeta and RR. make will not rebuild
# trackDb on hgwdev unless the db is specified explicitly on the
# command line.
include ../../../inc/common.mk
DBS = hg16 hg17 hg18 hg19 hg19Haps \
venter1 \
panTro1 panTro2 \
gorGor1 \
ponAbe1 ponAbe2 \
rheMac2 \
papHam1 \
calJac1 \
otoGar1 tupBel1\
- canFam1 canFam2 \
+ canFam1 canFam2 canFamPoodle1 \
felCat3 \
mm6 mm7 mm8 mm9 \
rn3 rn4 rn5 \
speTri1 cavPor3 \
oryCun1 \
bosTau2 bosTau3 bosTau4 \
equCab1 \
equCab2 \
eriEur1 sorAra1 turTru1 vicVic1 pteVam1 tarSyr1 \
dipOrd1 proCap1 ochPri2 myoLuc1 \
micMur1 \
dasNov1 dasNov2 \
loxAfr1 loxAfr2 \
echTel1 \
monDom1 monDom4 monDom5 \
anoCar1 \
galGal2 galGal3 \
taeGut1 \
xenTro1 xenTro2 \
tetNig1 \
oryLat1 oryLat2 \
ornAna1 \
fr1 fr2 \
petMar1 \
braFlo1 \
cioSav1 \
danRer3 danRer4 danRer5 \
gasAcu1 \
dm1 dm2 dm3 \
dp2 dp3 \
droYak1 droYak2 \
droAna1 droAna2 \
droMoj1 droMoj2 \
droVir1 droVir2 \
droEre1 \
droSim1 \
droGri1 \
droPer1 \
droSec1 \
anoGam1 \
apiMel1 \
apiMel2 \
triCas2 \
ci1 ci2 cioSav2 \
strPur1 strPur2 \
nemVec1 \
aplCal1 \
ce2 ce3 ce4 ce5 ce6 \
cb1 cb2 cb3 \
caeRem1 caeRem2 caeRem3 \
caeJap1 \
priPac1 \
caePb1 caePb2 \
falciparum \
choHof1 \
sacCer1 \
sc1 \
h1n1 \
gliRes13 homIni13 homIni14 priMat13 canHg12 borEut13 \
rodEnt13 euaGli13 catArr1 homPan20 homIni20
GSID_DBS = \
hiv1 vax004 hivgne8 hivmn hivmn1 hivmn2 hivgne8v2 hivVax003Vax004
ARCHIVED_DBS = \
rheMac1 \
danRer1 \
mm5 \
mm6 \
danRer2
update: #clean
./loadTracks trackDb_${USER} hgFindSpec_${USER} ${DBS}
alpha: clean
${CVS} -q up -d -P .
./loadTracks -release=alpha trackDb hgFindSpec ${DBS}
strict: clean
${CVS} -q up -d -P .
./loadTracks -strict -release=beta trackDb hgFindSpec ${DBS}
# this will fail if we are not in a beta checkout:
checkbeta:
${CVS} status trackDb.ra | egrep 'v[0-9]+_branch' > /dev/null
beta: checkbeta clean strict
# Get rid of symbolic links (created by lower-level makefiles):
clean:
find . -type l -exec rm {} \;