src/utils/qa/countPerChrom.csh 1.12

Index: src/utils/qa/countPerChrom.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/countPerChrom.csh,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 4 -r1.11 -r1.12
--- src/utils/qa/countPerChrom.csh	3 Jun 2009 01:56:14 -0000	1.11
+++ src/utils/qa/countPerChrom.csh	8 Jun 2009 23:21:42 -0000	1.12
@@ -38,9 +38,9 @@
   echo "    usage:  database1 table [database2] [RR]"
   echo
   echo "      checks database1 on dev"
   echo "      database2 will be checked on beta by default"
-  echo "        RR will use genome-mysql if specified"
+  echo "        if RR is specified, will use genome-mysql"
   echo
   exit
 else
   set db=$argv[1]
@@ -52,12 +52,17 @@
     set host2="mysql -h genome-mysql -u genome -A"
     set oldDb=$db
     set machineOut="(${argv[3]})"
   else
-    # argv[3] must be a db
-    set oldDb=$argv[3] 
     set host2="hgsql -h $sqlbeta"
     set machineOut="(hgwbeta)"
+    if ( $argv[3] == "hgwbeta" ) then
+      # allow use of "hgwbeta to check same db in two places
+      set oldDb=$db
+    else
+      # argv[3] must be a db
+      set oldDb=$argv[3] 
+    endif
   endif
 endif
 
 if ( $#argv == 4 ) then