hiram: changes by commit

branch to review (2009-05-26 to 2009-06-02) v207

• Update to the lastz run status, many going at this point
  • src/hg/makeDb/doc/hg19.txt 1.19 - lines changed: 382, context: html, text, full: html, text
• Running Elephant and Tenrec lastz
  • src/hg/makeDb/doc/hg19.txt 1.20 - lines changed: 103, context: html, text, full: html, text
• Do not allow ruler chrom name to spill over into buttons on left, truncate chrom name until it fits properly
  • src/hg/hgTracks/hgTracks.c 1.1567 - lines changed: 13, context: html, text, full: html, text
• Add Primates Chain/Net composite track as an 'alpha' release configuration
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.20 - lines changed: 162, context: html, text, full: html, text
• Adding placental and vertebrate Chain/Net composite tracks
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.21 - lines changed: 612, context: html, text, full: html, text
• allow the Primates chain and net tracks to sort by specified order
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.22 - lines changed: 33, context: html, text, full: html, text
• Put Venter chain and net together into a composite
  • src/hg/makeDb/trackDb/trackDb.ra 1.507 - lines changed: 45, context: html, text, full: html, text
• Fixup chainCfgUi to honor a normScore option from the trackDb composite bucket
  • src/hg/lib/hui.c 1.206 - lines changed: 47, context: html, text, full: html, text
• No species dimension in the venter chain net composite
  • src/hg/makeDb/trackDb/trackDb.ra 1.508 - lines changed: 2, context: html, text, full: html, text
• Indicate chain norm score available for the MHC composite of chains and nets
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.23 - lines changed: 1, context: html, text, full: html, text
• Put in the species order list for the Placental chain net composite track
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.24 - lines changed: 206, context: html, text, full: html, text
• Now with all tracks individually configurable, and species order on Vertebrate group
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.25 - lines changed: 54, context: html, text, full: html, text
• lastz run updates, now running the last two, and many are finished
  • src/hg/makeDb/doc/hg19.txt 1.21 - lines changed: 282, context: html, text, full: html, text