src/hg/makeDb/doc/hg19.txt 1.27

1.27 2009/06/19 21:54:43 hiram
Need to load exoniphy manually, it seems to have different columns in it ?

Index: src/hg/makeDb/doc/hg19.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg19.txt,v
retrieving revision 1.26
retrieving revision 1.27
diff -b -B -U 4 -r1.26 -r1.27
--- src/hg/makeDb/doc/hg19.txt	19 Jun 2009 21:37:32 -0000	1.26
+++ src/hg/makeDb/doc/hg19.txt	19 Jun 2009 21:54:43 -0000	1.27
@@ -5063,9 +5063,16 @@
     #	178162 exoniphyHg18.gp
     #	178109 exoniphyHg19.gp
     #	   106 unmapped
 
-    nice -n +19 hgLoadGenePred -genePredExt hg19 exoniphy exoniphyHg19.gp
+    mkdir dump
+    cd dump
+    hgsqldump --all -c --tab=. hg18 exoniphy
+    cd ..
+    chmod 775 dump
+    hgsql hg19 < dump/exoniphy.sql
+    hgsql hg19 \
+-e "load data local infile \"exoniphyHg19.gp\" into table exoniphy;"
     nice -n +19 featureBits hg19 exoniphy
     #	27421336 bases of 2897316137 (0.946%) in intersection
     nice -n +19 featureBits hg18 exoniphy
     #	27475705 bases of 2881515245 (0.954%) in intersection