src/hg/makeDb/trackDb/snp129.html 1.7
1.7 2009/06/22 17:37:12 kuhn
removed some comments about comparing to previous versions
Index: src/hg/makeDb/trackDb/snp129.html
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/snp129.html,v
retrieving revision 1.6
retrieving revision 1.7
diff -b -B -U 4 -r1.6 -r1.7
--- src/hg/makeDb/trackDb/snp129.html 29 Nov 2008 20:00:33 -0000 1.6
+++ src/hg/makeDb/trackDb/snp129.html 22 Jun 2009 17:37:12 -0000 1.7
@@ -63,24 +63,19 @@
<B>Function</B>: Predicted functional role
(<I>each variant may have more than one functional role</I>)<BR>
<UL>
<LI><B>Locus Region</B> - variation within 2000 bases of gene, but not
- in transcript (in build 127 and before, the keyword was
- <TT>locus</TT>, but since build 128, the more specific terms
- <TT>near-gene-3</TT> and <TT>near-gene-5</TT> are used)
+ in transcript (<TT>near-gene-3</TT>, <TT>near-gene-5</TT>)
<LI><B>Coding - Synonymous</B> - no change in peptide for allele with
respect to reference assembly (<TT>coding-synon</TT>)
<LI><B>Coding - Non-Synonymous</B> - change in peptide for allele with
- respect to reference assembly (<TT>coding-nonsynon</TT> in build
- 127; <TT>nonsense</TT>, <TT>missense</TT>, <TT>frameshift</TT>
- since build 128)
+ respect to reference assembly (<TT>nonsense</TT>, <TT>missense</TT>,
+ <TT>frameshift</TT>)
<LI><B>Untranslated</B> - variation in transcript, but not in coding
- region interval (<TT>untranslated</TT> in build 127;
- <TT>untranslated-3</TT>, <TT>untranslated-5</TT> since build 128)
+ region interval (<TT>untranslated-3</TT>, <TT>untranslated-5</TT>)
<LI><B>Intron</B> - variation in intron, but not in first two or last two bases of intron
<LI><B>Splice Site</B> - variation in first two or last two bases of
- intron (<TT>splice-site</TT> in build 127; <TT>splice-3</TT>,
- <TT>splice-5</TT> since build 128)
+ intron (<TT>splice-3</TT>, <TT>splice-5</TT>)
<LI><B>Reference (coding)</B> - allele observed in a coding region of
the reference sequence (<TT>cds-reference</TT>)
<LI><B>Unknown</B> - no known functional classification
</UL>