src/hg/makeDb/trackDb/trackDb.ra 1.512
1.512 2009/06/16 17:04:05 angie
hgFindSpec tweaks: for the more restrictive stsMapAliasMrnaAcc search, don't require that all aliases match the termRegex. Broaden sgpGene and geneid termRegexes to accomodate hg19.
Index: src/hg/makeDb/trackDb/trackDb.ra
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/trackDb/trackDb.ra,v
retrieving revision 1.511
retrieving revision 1.512
diff -b -B -U 4 -r1.511 -r1.512
--- src/hg/makeDb/trackDb/trackDb.ra 12 Jun 2009 21:53:49 -0000 1.511
+++ src/hg/makeDb/trackDb/trackDb.ra 16 Jun 2009 17:04:05 -0000 1.512
@@ -3832,8 +3832,9 @@
xrefTable stsAlias
xrefQuery select trueName,alias from %s where alias like '%s'
searchBoth on
termRegex [a-z][a-z0-9][0-9]+
+dontCheck [^[:space:]]+
searchDescription Alias of STS Marker
searchPriority 11
padding 100000
@@ -4136,15 +4137,15 @@
searchPriority 50
searchTable sgpGene
searchType genePred
-termRegex chr[^_]+_(random_|h2_hap[0-9]_|cox_hap[0-9]_|qbl_hap[0-9]_|hla_hap[0-9]_)?[0-9]+(\.[0-9]+)?
+termRegex chr[^_]+_((gl[0-9]+_)?(random_)?|([a-z0-9]+)_hap[0-9]_)?[0-9]+(\.[0-9]+)?
searchPriority 50
searchTable geneid
searchType genePred
searchMethod prefix
-termRegex chr[^_]+_(random_|h2_hap[0-9]_|cox_hap[0-9]_|qbl_hap[0-9]_|hla_hap[0-9]_)?[0-9]+(\.[0-9]+)?
+termRegex chr[^_]+_((gl[0-9]+_)?(random_)?|([a-z0-9]+)_hap[0-9]_)?[0-9]+(\.[0-9]+)?
searchPriority 50
searchTable ECgene
searchType genePred