hiram: changes by file

review to branch (2009-06-16 to 2009-06-23) v209

• src/hg/makefile
  • 1.152 lines changed: 1, context: html, text, full: html, text
    bedSplitOnChrom should be on the build list, used in UCSC gene production
• src/hg/hgGene/links.c
  • 1.38 lines changed: 0, context: html, text, full: html, text
    Fixup background color on Links Out table when only one row of links ...
• src/hg/makeDb/doc/hg19.txt
  • 1.27 lines changed: 8, context: html, text, full: html, text
    Need to load exoniphy manually, it seems to have different columns in it ?
  • 1.26 lines changed: 695, context: html, text, full: html, text
    Cytobands done, Venter Poodle chain/net done, starting 46-way conservation, exoniphy lifted from hg18, liftOver to hg18 done.
• src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes11.csh
  • 1.2 lines changed: 28, context: html, text, full: html, text
    Have proceeded through the first cluster job OK without CCDS genes
  • 1.1 lines changed: 1121, context: html, text, full: html, text
    Beginning to work through this script to get it ready for UCSC gene build
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.31 lines changed: 170, context: html, text, full: html, text
    Turning on first look at 46-way alignment
• src/utils/bedToBigBed/itemRgb.as
  • 1.1 lines changed: 13, context: html, text, full: html, text
    Adding an itemRgb test example
• src/utils/bedToBigBed/itemRgb.bed
  • 1.2 lines changed: 0, context: html, text, full: html, text
    The spaces need to be tabs since that is what comes out of bigBedToBed
  • 1.1 lines changed: 21, context: html, text, full: html, text
    Adding an itemRgb test example