src/hg/makeDb/doc/mm9.txt 1.97

Index: src/hg/makeDb/doc/mm9.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/mm9.txt,v
retrieving revision 1.96
retrieving revision 1.97
diff -b -B -U 4 -r1.96 -r1.97
--- src/hg/makeDb/doc/mm9.txt	10 Jun 2009 23:12:29 -0000	1.96
+++ src/hg/makeDb/doc/mm9.txt	11 Jun 2009 00:11:49 -0000	1.97
@@ -9369,12 +9369,11 @@
     mkdir -p /hive/data/genomes/mm9/bed/miRNA-2009-06-09
     cd /hive/data/genomes/mm9/bed/miRNA-2009-06-09
     # Download GFF file of latest miRNA annotations from miRBase at the
     # Wellcome Trust Sanger Institute (WTSI). This is Release 13.0.
+    # (March 2009)
     wget --timestamping \
 ftp://ftp.sanger.ac.uk/pub/mirbase/sequences/CURRENT/genomes/mmu.gff
-    # The previous version that is currently on the Genome Browser has 493 
-    # annotations. This version has 470 miRNAs.
     # Re-format, need to add "chr" to the beginning of each line.
     sed -e 's/^/chr/' mmu.gff > mmMirBaseFormat.gff
     # Remove extra "chr" in comment lines
     perl -pi.bak -e 's/chr#/#/' mmMirBaseFormat.gff
@@ -9407,10 +9406,10 @@
 # Sorted
 # Creating table definition for miRNARel13
 # Saving bed.tab
 # Loading mm9
-    hgsql -e 'select count(*) from miRNARel13;' mm9 
+    hgsql -e 'select count(*) from miRNA;' mm9 
 # 568
 # The previous version had 493 miRNAs.
-hgsql -e 'select count(distinct name) from miRNARel13;' mm9
+hgsql -e 'select count(distinct name) from miRNA;' mm9
 # 541
 # The previous version had 466 unique miRNAs.