markd: changes by file

branch to review (2009-06-09 to 2009-06-16) v208

• src/hg/makefile
  • 1.151 lines changed: 6, context: html, text, full: html, text
    only build encodeValidate on hgwdev/hgwbeta
• src/hg/hgc/hgc.c
  • 1.1555 lines changed: 6, context: html, text, full: html, text
    avoid pop all warn handles; just hacked around it
  • 1.1553 lines changed: 453, context: html, text, full: html, text
    added support for chimera in H1N1 prototype; also some refactoring
• src/hg/hgc/makefile
  • 1.61 lines changed: 1, context: html, text, full: html, text
    added support for chimera in H1N1 prototype; also some refactoring
  • 1.60 lines changed: 6, context: html, text, full: html, text
    removed bash-specific syntax
• src/hg/hgc/virusClick.c
  • 1.7 lines changed: 52, context: html, text, full: html, text
    get gisaid locations from hg.conf
  • 1.6 lines changed: 18, context: html, text, full: html, text
    highlight only specific sequence differences in gene seq display
  • 1.2 lines changed: 13, context: html, text, full: html, text
    extract protein ids for dynamic_highlight script
  • 1.1 lines changed: 523, context: html, text, full: html, text
    added support for chimera in H1N1 prototype; also some refactoring
• src/hg/hgc/virusClick.h
  • 1.1 lines changed: 8, context: html, text, full: html, text
    added support for chimera in H1N1 prototype; also some refactoring
• src/lib/bigBed.c
  • 1.19 lines changed: 3, context: html, text, full: html, text
    don't bogusly crash on array or list colomns
• src/utils/bigBedSummary/bigBedSummary.c
  • 1.6 lines changed: 1, context: html, text, full: html, text
    fixed non-portable code
• src/utils/bigWigSummary/bigWigSummary.c
  • 1.10 lines changed: 1, context: html, text, full: html, text
    fixed non-portable code