src/utils/qa/commTrio.csh 1.4

Index: src/utils/qa/commTrio.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/commTrio.csh,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 1000000 -r1.3 -r1.4
--- src/utils/qa/commTrio.csh	22 Nov 2006 18:36:20 -0000	1.3
+++ src/utils/qa/commTrio.csh	15 Jun 2009 18:52:11 -0000	1.4
@@ -1,97 +1,97 @@
-#/bin
+#!/bin/tcsh
 
 ##############################
 #
 # 1-20-2006
 # This script does the triple comm command 
 # to compare the diffs between two files
 #
 # comm -23 left right > left.Only
 # comm -13 left right > right.Only
 # comm -12 left right > left.right.Only
 # wc -l *Only | grep -v otal
 #
 ################################
 
 set left=""
 set right=""
 set leftFile=""
 set rightFile=""
 set leftDir=""
 set rightDir=""
 
 
 # useage statement
 if ($#argv < 2 || $#argv > 3) then
   echo
   echo " Sorts and compares two files.  "
   echo " Counts unique and common records."
   echo
   echo "     usage:  leftFileName rightFileName [rm]"
   echo "             optional [rm]: remove the three output files when finished"
   echo
   exit 1
 endif
 
 # strip the directory and file name off the user's input
 # these variables hold the path/filename as the user input them
 set left=$1
 set right=$2
 
 # ":t" takes just the 'tail' of the file input (i.e. FileName.ext)
 set leftFile=$1:t
 set rightFile=$2:t
 
 # ":h" takes just the 'path' of the file input (i.e. directory structure)
 set leftDir=$1:h
 set rightDir=$2:h
 
 
 # make sure the files exist
 if (! -e $left) then
   echo "sorry, can't find your file named $left - quitting now"
   echo
   exit 1
 endif
 
 if (! -e $right) then
   echo "sorry, can't find your file named $right - quitting now"
   echo
   exit 1
 endif
 
 # sort the files first
 
 sort $left > leftSort
 sort $right > rightSort
  
 
 # now do it
 
 comm -23 leftSort rightSort > $left.Only
 comm -13 leftSort rightSort > $right.Only
 comm -12 leftSort rightSort > $left.$rightFile.Only
 
 wc -l $left.Only $right.Only $left.$rightFile.Only | grep -v otal
 
 echo
 
 # remove the intermediate files
 
 rm leftSort
 rm rightSort
 
 
 # remove the output files if they asked for it
 if ($#argv == 3) then
   if ($argv[3] == "RM" || $argv[3] == "rm") then
     rm -f $left.Only
     rm -f $right.Only
     rm -f $left.$rightFile.Only
     echo "removed output files"
     echo
     exit
   endif
 endif